Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2291 ATGCCTATTCATAGTAATCAACATGCAGCTTCAGAAGGCATTCTTGAGAATGTATGGGCAAAAATTATCAGCAGTGATAGAACATCAAATGCACCAGAGCCTTCCAGTTCCTGGGAGGAACTGCCTAAGCTTGATGGAACAAGAGATGGGTCTATGGAAGTTCTGAAAAGGCTTCCAAGCTTAGGAAGATGGATATCAATGGGAGCTGAGTTCTGGGAAGAAATCTTAGATGGGTTTTTTCTTCCTGCTGAAAGCAATGCAAAAGACTCTAGCAATAACTGTTCAGAAACTTGCAGTTCTACTGAATCCAACAAGAACGTAGAAGATGCTGTGAAAGCAGAGAAGTTAGCTGCAAAACACTACAGGGGAGTAAGGAGAAGGCCATGGGGAAAATATGCAGCAGAAATCAGAGACTCATCAAGAAAAGGTGCTAGAGTTTGGTTGGGGACATTTGAGACAGCTGAGGAAGCAGCTTTGGCTTATGACAAGGCTGCTTTGAGAATTAGGGGCCCTAAGGCATACCTCAATTTCCCACTTGAGACAGTTTCAAAGGCTTTAAAATATGACCAGAAAGGAACTAATTTTGCTAGCGGTGCTTCTACAACTTGTGAAGAGGACCACTCCGCTGCCACATATAAAAGGGGCAAAGAAAACTACTGCAATTCCCGTAAGAGAGGATGGCGAGAGGGAAGAGAAGAATTTGCTGATATGATGAATGACGAACCTGCAACAAAGAAAATGGCAAGCTTGGAAGGCACGCTAGGGAACGAACTAGATGCTTTTGTTCTTCAGGACTTGGGTATTGATTACTTGGACAGTTTATTATCTTCTTTTTAA 837 0.4265 MPIHSNQHAASEGILENVWAKIISSDRTSNAPEPSSSWEELPKLDGTRDGSMEVLKRLPSLGRWISMGAEFWEEILDGFFLPAESNAKDSSNNCSETCSSTESNKNVEDAVKAEKLAAKHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLETVSKALKYDQKGTNFASGASTTCEEDHSAATYKRGKENYCNSRKRGWREGREEFADMMNDEPATKKMASLEGTLGNELDAFVLQDLGIDYLDSLLSSF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2291 278 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Glsi11g2291 278 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Glsi11g2291 278 PANTHER DNA-BINDING DOMAIN 91 222 IPR044808 GO:0003700|GO:0009873
Glsi11g2291 278 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Glsi11g2291 278 SUPERFAMILY DNA-binding domain 120 180 IPR016177 GO:0003677
Glsi11g2291 278 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Glsi11g2291 278 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Glsi11g2291 278 FunFam Ethylene-responsive transcription factor 2 119 180 - -
Glsi11g2291 278 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Glsi11g2291 278 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2291 Glsi-ChrGlsi11 16048090 16048926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2291 14 278 AP2-EREBP Transcription Factor Family AT4G18450 37.864 9.83e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g2291 AP2 1.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2291 11 16048090 16048926 Glsi11g2291 11 16048090 16048926 ECH