Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2284 ATGGGGTTTGAAGATCATGAAATTGAAGATGATTCACTTGGTACAGGCCTAAAGTTCATGCTCGCTGCAGCTTTCTCTTTATTCGCTATTGTCTTGCTCGTCATCATCTTCCATATCTACGCAAGACATCTTCGAAAACGCCAACTAACAAGACGCCACCGTGATCAACAGCTAGTTAATCAGATCAATATTATTACTCAAATTGCACCACTTGATGGGAGCTTCGGGGAGCCACCACCGAACCAGGGTCTTGACCCTTTGATCATAGCCTCACTTCCTAAACTATTGTACAAGCAAACGGACCAGTTCAGCCAGCAGGGTGAAGCCATAGAGTGCTCAGTTTGCTTAGGCACTATGGCTGAAGATGCAACAATTAGGGTTTTACCAAACTGTAAGCACTTGTTTCATGCTGATTGTGTTGATATGTGGTTCGGTTCAAACATCACCTGCCCAATTTGCCGCACCGTGGCTGAACCCAGGGTTCAACCCACAGCACCACCAGTAGAGAATGGTGTGCCGGTACAAGAGGCTAATAATGAATTGGCAGAGGGGGGCGGTTCCGGTTTGAGAATGACCTCTTTCCAAAGCATGGTTAGTAGGGAAAGATCACTGAGAAGGGATCATAACTCCGAGGGGTTCGCCACCACAGAAGATATAGAACGGCTCTAG 669 0.4679 MGFEDHEIEDDSLGTGLKFMLAAAFSLFAIVLLVIIFHIYARHLRKRQLTRRHRDQQLVNQINIITQIAPLDGSFGEPPPNQGLDPLIIASLPKLLYKQTDQFSQQGEAIECSVCLGTMAEDATIRVLPNCKHLFHADCVDMWFGSNITCPICRTVAEPRVQPTAPPVENGVPVQEANNELAEGGGSGLRMTSFQSMVSRERSLRRDHNSEGFATTEDIERL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2284 222 SMART ring_2 112 153 IPR001841 -
Glsi11g2284 222 SUPERFAMILY RING/U-box 89 161 - -
Glsi11g2284 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 159 IPR013083 -
Glsi11g2284 222 CDD RING-H2_EL5-like 111 154 - -
Glsi11g2284 222 Pfam Ring finger domain 111 154 IPR001841 -
Glsi11g2284 222 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Glsi11g2284 222 MobiDBLite consensus disorder prediction 200 222 - -
Glsi11g2284 222 PANTHER RING FINGER DOMAIN-CONTAINING 23 155 - -
Glsi11g2284 222 FunFam E3 ubiquitin-protein ligase ATL6 77 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2284 Glsi-ChrGlsi11 15992285 15992953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2284 18 221 C3H Transcription Factor Family AT2G42360 34.375 1.37e-32 116