Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2267 ATGGATTTCTCCAAGAAGCGCAAAACCGAAGAGAATGGAAACACTGATTCTGTGCCACCCACCACCACCACAACTGACCTTGGCCCAGATGACATCCGCAGGATCCTCCAACCCTTCACCCAAGAACAGCTCCTCGAGCTGCTTCAATCAGCTGCTCTTCGTCATCCTGACGTTCTCGAGGCTATACGTTCCGTTGCCGACCGCGACTCCACCCTTCGGAAACTTTTTGTTCGGGGGCTTGCCGGGGAAACCACCACGGAGACACTCAGCAGTGTCTTCTCCTCCTATGGGGAGCTTGATGAGGCGATCGTTATCTTTGACAAAACGACGGGGAAGTCCAAAGGTTACGGATTTGTGACGTTTAAGCACGTTGATGCTGCTATACTGGCTTTGAAGGAGCCAAGCAAGAAAATTGATGGGAGAATGACGGTGACCCAGCTTGCGGCTGCTGGGTTATCGGGTGGACAAGGGACTAATGCGGCCGCAGCAGCCACAAGTGATGTTTCTGCCAGAAAAATTTTTGTGGGTAATGTGCCGTTTGATATCTCGTCGGAAAGGCTGTTAAGTTACTTCTTGACGTATGGGGAAATCGAAGAAGGGCCTCTTGGGTTTGATAAAGGTAATGGGAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCAAGGGCGTCTCTTGTTGAGTCCGTCAAGACTATTGATGGGCATCAAGTGGTTTGTAAACTGGCCATGGATAACAAGAAGGGAAAGCAAGGAGGGGTTCCGAGTCAGGCGCCACCCGGGCTACCAGGGAATGGCATGGCAGCACAGCAACCGCAACCATCTTTGCCAGGTCCTATGATGGGATCACATTATGGCGGTCCTGGCTCTTTGTCATCATATGGGGCATTTGGTGGTGCGCATCAGGGCCCCTTCACATTGCCTAGTAATAATTATGGGTTGCAGTCCTCATTGCCGTCATTTGGCACTCAGGTTCCACCTACCTTGACTCCTAATAGTGGCGGCGGATATGGTCCAGGAATTGGAGGTGGGTATAGTGGTTCTCAGTTTAGTGGGCCAACTTCTGGTGATTATGGGGGCAGCATCAACAGTCCATGCCAATGCCAAGACTCGCTCCTGGAGGAATGTACCAAGGCATGCCGCCCTACTACTGAGTCTGAGGTTTGTGATGGCTTCTTGGGCGCTAATGCTTTAAATGGTTGTGCTGATTTCGTGAATGCAGACAATGAAATCTTTGGTTTTGATTACATGGACTGCTGTGAATTTGTTGCTGCTTCACTACCTCTGCTTCTATGTGTTGTGGTTCCATTTGTGATAGGTGTTAGTGAAAGCTTACATAACTTCGCTTAG 1359 0.5004 MDFSKKRKTEENGNTDSVPPTTTTTDLGPDDIRRILQPFTQEQLLELLQSAALRHPDVLEAIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSYGELDEAIVIFDKTTGKSKGYGFVTFKHVDAAILALKEPSKKIDGRMTVTQLAAAGLSGGQGTNAAAAATSDVSARKIFVGNVPFDISSERLLSYFLTYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVESVKTIDGHQVVCKLAMDNKKGKQGGVPSQAPPGLPGNGMAAQQPQPSLPGPMMGSHYGGPGSLSSYGAFGGAHQGPFTLPSNNYGLQSSLPSFGTQVPPTLTPNSGGGYGPGIGGGYSGSQFSGPTSGDYGGSINSPCQCQDSLLEECTKACRPTTESEVCDGFLGANALNGCADFVNADNEIFGFDYMDCCEFVAASLPLLLCVVVPFVIGVSESLHNFA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2267 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Glsi11g2267 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Glsi11g2267 452 MobiDBLite consensus disorder prediction 14 28 - -
Glsi11g2267 452 MobiDBLite consensus disorder prediction 250 279 - -
Glsi11g2267 452 SMART rrm1_1 74 146 IPR000504 GO:0003723
Glsi11g2267 452 SMART rrm1_1 172 244 IPR000504 GO:0003723
Glsi11g2267 452 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Glsi11g2267 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 239 IPR000504 GO:0003723
Glsi11g2267 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Glsi11g2267 452 SUPERFAMILY RNA-binding domain, RBD 65 148 IPR035979 GO:0003676
Glsi11g2267 452 Gene3D - 64 151 IPR012677 -
Glsi11g2267 452 SUPERFAMILY RNA-binding domain, RBD 164 258 IPR035979 GO:0003676
Glsi11g2267 452 PANTHER GEO13361P1-RELATED 56 301 - -
Glsi11g2267 452 MobiDBLite consensus disorder prediction 1 30 - -
Glsi11g2267 452 Gene3D - 156 276 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2267 Glsi-ChrGlsi11 15881532 15884025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2267 163 347 C2H2 Transcription Factor Family AT2G19380 31.280 4.63e-17 82.0