Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2265 ATGTCGTCTTCATCTTCTATTCGGGTATTATCTTACATAAAGCTTCAATTCTTTGCCCGCATCAAACGGTTTATCAAATCCAAAGCGATCCGAATTAACTGCGTCGCACCTGATCGATTTGACAAATCAAAGAACAAAGCTGAGAGCAAAAACATCGATGAAAACTGTGAAGCAGCACAAGTTGTGGAGACGCAGAGTAGTGAGCAGGAGCCCCTGTTCCTGTTGAAGAGGTGTGTGAAGAAGCTTCACTTTGGGAGTTGGGAAGAGAAGGAGACGACAGCAAAAGAGATTGAAAGGTTAGCTAAAGAAGATGTCAAGGTTAGAAAGTTGATAGCAGAGCTAGGAGTAGTGCCAGTGTTGGTGTCTATGGCAGCTTCGGAGGTGGCTAGCCGGCGGCGAGCAGGGGTGACGGCGTTGATCCAGCTCGCCGAAGGAACTTACAAGACCAAGGCTCTGATAGTGGAGGCAGGAATACTGTCCAAGCTGCCCAAGAGAATTGACCTCGTAGATGAATCAACAAGAAGTGAATATGCAGAGTTGCTGTTATCACTGTCATCTCTAGCAAACACCCAATTCCCTCTTGTTTCATCGGACTTCCTCCCATTTCTTAGGGATATTCTTGAATCAGACTCAAGTTTTGGAACCAAACAATCATGCTTGGGTGCCTTTTATAACCTCTCAGCCGTGTTAGAGAGTGCAGGGCCTTTGGTTTCTAGTGGAATTGTGCCTATTCTCTTGGAACTGTCATCAATTAAAGATATTTCAGAGAAAGCACTCGCCACTCTCGGGAACTTGGTGGTGACTTTGATGGGAAAAAAGGCAATAGAGAATAGCTCGATGGTGCCAGAGAGCATTATAGAGATATTGTCATGGGAGGATAGACCAAAATGCCAAGAGTTGTCAGCTTATATTTTGATGATTCTAGCTCATCAAAGCTCATCACAGAGAGAAAAAATGGCAGAGGCAGGGATTGTTCCCGTGCTTCTTGAAGTGGCTCTATTGGGAAGCGCTTTAGCTAGGAAGAGAGCATTAAAGCTGCTGCAATGGTTTAAAGATGAAAGGCAAGCAAAGATAGGGCCACATTCTGGGCCACAAACACCAAGAATAGCAATGGGTTCACCTCTAAATCAAAGAGAGGCAATAGGGGGAAAGAGAATGATGAAGAATTTGGTGAAACAAAGTTTGCAAAGGAATATGGAAATTATTACTGAGAGAGCCAATACAGCTGGGGATCCATTTAAGATAAAGTCCCTTGTTCTCAGCACAAGTTCCAAGAGGTGGAAAAATCAACTTGATGTGCTAAGTGTAACCTCGTACAAAATGATGAGCAAAAGATATTCATGCGAGCCATTTTTCAAGTTAAGCATTCCTATTTCACTATAA 1383 0.4353 MSSSSSIRVLSYIKLQFFARIKRFIKSKAIRINCVAPDRFDKSKNKAESKNIDENCEAAQVVETQSSEQEPLFLLKRCVKKLHFGSWEEKETTAKEIERLAKEDVKVRKLIAELGVVPVLVSMAASEVASRRRAGVTALIQLAEGTYKTKALIVEAGILSKLPKRIDLVDESTRSEYAELLLSLSSLANTQFPLVSSDFLPFLRDILESDSSFGTKQSCLGAFYNLSAVLESAGPLVSSGIVPILLELSSIKDISEKALATLGNLVVTLMGKKAIENSSMVPESIIEILSWEDRPKCQELSAYILMILAHQSSSQREKMAEAGIVPVLLEVALLGSALARKRALKLLQWFKDERQAKIGPHSGPQTPRIAMGSPLNQREAIGGKRMMKNLVKQSLQRNMEIITERANTAGDPFKIKSLVLSTSSKRWKNQLDVLSVTSYKMMSKRYSCEPFFKLSIPISL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2265 460 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 425 - -
Glsi11g2265 460 Gene3D - 42 363 IPR011989 -
Glsi11g2265 460 SUPERFAMILY ARM repeat 77 349 IPR016024 -
Glsi11g2265 460 SMART arm_5 229 267 IPR000225 GO:0005515
Glsi11g2265 460 SMART arm_5 104 144 IPR000225 GO:0005515
Glsi11g2265 460 SMART arm_5 146 186 IPR000225 GO:0005515
Glsi11g2265 460 SMART arm_5 187 228 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2265 Glsi-ChrGlsi11 15875876 15878828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2265 88 375 U-box Gene Family AT1G67530 29.900 3.62e-20 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2265 11 15875876 15878828 Glsi11g2265 11 15875876 15878828 ECH