Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2264 ATGGTTTACTACTCTTATAACTCGAACTCTTCATCTGGGTCTGATATTTCGAGAATATTCAATCCAATTTCGCATAACCTTGGTGATTCTGATGATTTTTCGCCAAGTGGGTTGGCAACACCGCATTCGTTGGTTCTGAACAGTGAGAAGGGGGAGCTAGTGAAGTCCCCTAGAAGGATAGGAAAGAAAAGGGTATCTGAGGCAAAAGCTTTAGCGGCTATGAAGAGCCATAGTGAAGCAGAGAGGAGGAGAAGGGAGAGAATAAATGGTCATCTTGCTACACTTCGTGGTCTTGTGCCCTGCAATGAAAAGATGGATAAAGCCACGTTACTGGCTGAAGTTATCAATCAAGTGAAGGAACTGAAGAAGAATGCAGTGGAAGCAAGCAGAGGTTTTCTTATTCCAATGGATGATGATGAAGTGAAAGTTGAACCATACAATGATGAAGGAGTAGATGGATCAAAGTCTTACAAGGCATCTGTCTGCTGTGATTACCAACCTGAGCTTCTATCTGACCTAAGACAGGCTCTCGATGCCCTTCAACTACACTTGGTGAGGGCAGAAATATCAACTTTGGGAGGCAGGGTGAAGAATGTATTTGTCTTTACATGCTGCAAAAGGGACCATATTAATATTGAGGCATGCCAACTTCTTCCAAATACTGTCCACCAGGCACTAAGTTCTGTACTGGAAAAAGCTTCTAGCTCAATGGAATACTCGCTAAGAATGTCATTTCCAAGGAAGCGCCGAAGACTTTGCTTCACTGAAACATCTACCTCATAA 783 0.4291 MVYYSYNSNSSSGSDISRIFNPISHNLGDSDDFSPSGLATPHSLVLNSEKGELVKSPRRIGKKRVSEAKALAAMKSHSEAERRRRERINGHLATLRGLVPCNEKMDKATLLAEVINQVKELKKNAVEASRGFLIPMDDDEVKVEPYNDEGVDGSKSYKASVCCDYQPELLSDLRQALDALQLHLVRAEISTLGGRVKNVFVFTCCKRDHINIEACQLLPNTVHQALSSVLEKASSSMEYSLRMSFPRKRRRLCFTETSTS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2264 260 PANTHER TRANSCRIPTION FACTOR BHLH30 40 255 IPR045847 GO:0003700|GO:0006355
Glsi11g2264 260 Coils Coil 111 131 - -
Glsi11g2264 260 Coils Coil 170 190 - -
Glsi11g2264 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Glsi11g2264 260 SMART finulus 78 127 IPR011598 GO:0046983
Glsi11g2264 260 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Glsi11g2264 260 CDD ACT_UUR-ACR-like 160 203 - -
Glsi11g2264 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 124 IPR036638 GO:0046983
Glsi11g2264 260 Gene3D - 67 129 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2264 Glsi-ChrGlsi11 15870220 15872820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2264 65 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 44.000 3.00e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g2264 HLH 2.4e-10 No_clan