Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2257 ATGGCCCAAGTGAAAAACGGCCAAGACAATCAGGGGATTAAGCTGTTCGGGACGACGATTACGTTGCATGGTAGACAAGTAAAAGACGTCGATCAGAAAGGCAGTGAGGATCGGACGATGGAGAAGAAGCCAGACAAGATAATACCATGTCCGAGGTGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAATTACAACGTTAATCAGCCTAGGCATTTCTGTAAAGGATGCCAGAGGTACTGGACCGCCGGTGGTGCTCTCCGGAACGTTCCCGTCGGGGCCGGCAGACGGAAGGCCAAGCCGCCGTGCCCTGGGGATGCTGGATTCTCGGAGGATTGTTATGAAGAATCTCAGGCCCACCAGTTTGGTTTGGATCATCAGGGGTTGAATATTGTGAACGAGTGGCATGTTGCCATGGCTCAGACTGATTTCCGGCAGCTTTTGCCGGCTAAACGGCGGAGGAACAGCTCAAGTGGTCAACCTCGTTAA 492 0.5183 MAQVKNGQDNQGIKLFGTTITLHGRQVKDVDQKGSEDRTMEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCPGDAGFSEDCYEESQAHQFGLDHQGLNIVNEWHVAMAQTDFRQLLPAKRRRNSSSGQPR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2257 163 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Glsi11g2257 163 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Glsi11g2257 163 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Glsi11g2257 163 PANTHER CYCLIC DOF FACTOR 2 32 104 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2257 Glsi-ChrGlsi11 15833091 15833582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2257 8 161 C2C2-Dof Transcription Factor Family AT2G34140 55.882 2.48e-55 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi11g2257 zf-Dof 3.9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2257 11 15833091 15833582 Glsi11g2257 11 15833091 15833582 ECH