Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2237 ATGGCGGACGTCGTTTCCAAGAAGACCGACGCCACCAAACCCACTAGCAGCAACAAGAAGATGAACGGGACTCTGTTATTGGGTCGCTTTGAAATTGGGAAGCTCCTCGGTCATGGGAATTTCGCGAAGGTCTACCACGCCCGGAACATCAGAACTGGCGAAGGGGTCGCCATTAAGGTCATAGACAAGGAGAAAATCCTAAAGAGTGGTTTGGTTGCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGTGTGCGCCACCCGAATATCGTCCAACTGTTCGAGGTTATGGCTACGAAGACCAAGATCTACTTCGTAATGGAATATGTTCGCGGCGGTGAGCTATTCAATAAGGTTGCTAAAGGGCGATTGAAAGAGGAAGCTGCAAGGAAGTACTTTCAGCAATTGATTTCTGCTGTTGAGTTCTGCCACGCAAGAGGGGTATACCATAGGGATCTCAAGCCTGAAAACTTGTTACTCGACGAAGATGGTAATCTCAGAGTGTCTGATTTCGGTTTAAGTACTGTATCTGATCAAATTAAGCAGGATGGTTTGTTCCATACATTTTGTGGGACTCCTGCTTATGTTGCTCCTGAGGTATTGGGTAGGAAAGGTTATGATGGGGCAAAGGTTGATATTTGGTCTTGTGGGGTTATTTTGTTTGTTTTGATGGCTGGGTACTTGCCTTTCCATGACCAGAACATTATGGCAATGTATAAGAAGATTTACAAAGGTGAGTTCAGATGTCCCAGGTGGTTTTCACCCGAGCTTTCTCGGCTTCTCACACGCCTTCTTGATACCAATCCACAAACCCGGATTGCCATTCCGGAGATTATGGAGAACAGGTGGTTCAAGAAAGGGTTCAAACAAATAAAGTTCTACGTTGAGGATGATAGACTTTGTAGTTTTGATGATAAGCTGGATGATGAAAGTGATATAGAATCAATTTCGGACTACTCAATATCGGAATCTGACTCCGAGTTAGAGACTAGAAGAAAGAAGGCTTCATTGCCAAGACCCGCGAGCTTGAATGCATTTGACATTATATCATTTTCTCCAGGTTTTGATCTTTCTGGGTTGTTTGAGGAGAAGGGGGATGAGGCGAGGTTTGTGTCCTGTGCACCAGTGTCAAAGATTATATCAAAATTAGAGGAAATTGCTAAATTGGTCAGTTTCACTGTGAGGAAGAAAGATTGCAGAGTGAGCTTGGAGGGTTCAAGAGAAGGCGTAAAGGGGCCACTGACGATTGCTGCAGAGATATTTGAATTAACACCTTCTTTGGTGGTGGTGGAGGTCAAGAAAAAAGGAGGGGATAAAGCTGAGTATGAGCAATTCTGCAACACTGAATTGAAACCTGGGTTACAGAAACTGATGATGGAGGAATCTGCAACTTCTTCAGCTACTGAACCTTCGCAAGGACTACCTGTAGATACAGATGCAGAACCTTCGCATGTACTACCTGTAGATACAGATACAGAACCTTTGCATGTACTACCTGTAGATACAGATACAGAACCTTCGCAGTACATACCTTCAGATACTGAATAG 1548 0.4457 MADVVSKKTDATKPTSSNKKMNGTLLLGRFEIGKLLGHGNFAKVYHARNIRTGEGVAIKVIDKEKILKSGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEAARKYFQQLISAVEFCHARGVYHRDLKPENLLLDEDGNLRVSDFGLSTVSDQIKQDGLFHTFCGTPAYVAPEVLGRKGYDGAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELSRLLTRLLDTNPQTRIAIPEIMENRWFKKGFKQIKFYVEDDRLCSFDDKLDDESDIESISDYSISESDSELETRRKKASLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVSCAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYEQFCNTELKPGLQKLMMEESATSSATEPSQGLPVDTDAEPSHVLPVDTDTEPLHVLPVDTDTEPSQYIPSDTE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2237 515 MobiDBLite consensus disorder prediction 459 473 - -
Glsi11g2237 515 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 17 451 - -
Glsi11g2237 515 CDD CIPK_C 344 455 - -
Glsi11g2237 515 ProSiteProfiles NAF domain profile. 338 362 IPR018451 GO:0007165
Glsi11g2237 515 FunFam Non-specific serine/threonine protein kinase 340 458 - -
Glsi11g2237 515 FunFam Non-specific serine/threonine protein kinase 21 109 - -
Glsi11g2237 515 ProSiteProfiles Protein kinase domain profile. 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2237 515 CDD STKc_SnRK3 29 283 - -
Glsi11g2237 515 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2237 515 FunFam Non-specific serine/threonine protein kinase 20 333 - -
Glsi11g2237 515 Pfam NAF domain 340 396 IPR004041 GO:0007165
Glsi11g2237 515 Gene3D Transferase(Phosphotransferase) domain 1 21 338 - -
Glsi11g2237 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Glsi11g2237 515 SMART serkin_6 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2237 515 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Glsi11g2237 515 SUPERFAMILY Protein kinase-like (PK-like) 26 285 IPR011009 -
Glsi11g2237 515 MobiDBLite consensus disorder prediction 459 515 - -
Glsi11g2237 515 Gene3D Kinase associated domain 1, KA1 339 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2237 Glsi-ChrGlsi11 15704767 15706314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2237 1 491 CBL-interacting serine-threonine protein kinases AT4G18700 76.056 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi11g2237 Pkinase 4.4e-75 CL0016