Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2236 ATGAACCCCTTTTGCAGATTCTGGATTCTTCTCGCGCTGTTTCCTCTCGTGGAGTCTTCATGCAACAGTACCGACCAGGAGCTGCTCTCAAAGGCCTTCCATTCTGTCTCCGGATTCAATGTTTCCTGGTTCCAAATACAAGGTTCAAACTGTTCAAAAGCTCCGGTTAGCAGAGTACAGCTTTCTTCCAAGAATCTGAGTGGGGCTATCTCCTGGGTGTATCTCAGGAACATGTCAAAGTTGCAGGTTCTTGATGTGTCTGGGAATTCTCTGCAAGGCCATGTGCCAAGCTGGTTTTGGGCATGTTCAAGCTTATTGGAAGTCAATCTGTCCAACAACAAGTTTGGAGGGAGCATTGGCTTCAGACCAACCTCAGGAAACGGTTCGTTTTCATCGGTTCAAAAGCTCAATCTCTCTCACAACAGGTTCACCAATATGGTTCCCCTTTCTGGGTTTTCAGAGCTTAAAATTCTTGACCTTTCTCATAACGATTTGAGGACTCTCCCCTCTGGGTTCCAAAACCTCACCAAGCTACAGCGCCTTGACCTCTCAAGCTGCAGTATCAAAGCAGATGTAAATCCTCTTTCTGTTCTACGATCATTGAACTACTTGGACTTGTCAAACAACGCTCTGAATGGTAGTTTCCCTTCTGATTTCCCTCCCCTGAAAAGCCTCAACTTCTTGAACATTTCTCACAACAACTTCACAACACTAGTTCACTTAGATAGGTACAAAAGATTTGGCAAATCAGCTTTCATTGACGCTGGAAACAACTTCATTTACGACGCATCCAAAACACCTAATCTTGATTCACCTCCACCTCGTCCTATAAGAATCGCAACGTTTCACCCCCAAAAAGAAAAGGCCAGAACTATAATTCTGGCAGTGTCCTCTGCCTCAGCATTTGTTCTGGTTCTACTGTCTACCTGGGTATTTTACATTTACAGAAAGAAGAGGCGATTGGCCAAAAAGAACAAATGGGCAATCTCGAAGCCGGTCCCATTGGCCATCAAGGTCGAGAAATCTGGGCCGTTCGCGTTCGAGACCGAGTCAGGCTCCTCGTGGGTTGCGGACTTGAAGGAGCCATCGTCCGCACCCGTGGTGATGTTCGAGAAGCCCTTGATGAACCTCAGCTTCGAGGACTTGATCGTTGCCACGTCACACTTCGGCAAGGACTCGCTGCTGGCGGAGGGCAGGTGTGGGCCCGTCTACAGAGCAGTTGTCCCGGGTGATATCCACGTGGCAATCAAGGTCTTAGAAAATGCAAGAGACGTTGATCGTGATGACGCCATAGCAATGTTCGTTGACCTATCCCGGCTCAAGCACCCCAATTTGTTGCCACTCTCCGGTTACTGCATTGCAGGTAAGGAGAAGCTGATTTTGTACGAGTTCATGTCGAACGGCGATTTGGGTAGGTGGCTATATGAGCTGCCCACGGGGGAGACTAATGTGGAGGATTGGACCGGTGACACGTGGGAGATCCAAAACGGCGTCGGATCCCAAGCCTCTTCTCCAGAGAAAATGGGTTGGCTAACGCGACACCGTATTTCGGTCGGGATAGCGCGGGGGCTAGCATATCTTCACCACGCAGGGTCAAAGCCCGTCGTTCATGGCCACCTAGTGACTTCAAATATCTTACTTGCGGACGACTTTGAGGCCCGAATCGCCGATTTCGGGTTCCGAAATATCGGGAAAGGGCATAACTCGAATTGCACGATGGAGACGGACGTTTACTGCTTCGGGGTGGTGCTGATGGAGCTGTTGACGGGGAAGCCGGGCTCGGCGGAGACGGTGGGATGGGTGAGGAAGCTGGTGAGGGAGGGGCACGGGGAGCGCGCGTTGGATGAGAGTCTGAGACTCAGTTGCGACTCCGAAAGCGAGATGGTGGAGAGCCTCCGAGTCGCGTACTTGTGTACAGCCGAGTCGCCTGGGAAGAGGCCCGCCATGCAGCAAGTCCTGGGTTTGCTAAAAGACATTCATCCCCACCACGGACTCGAACCAAGGTGA 2007 0.5077 MNPFCRFWILLALFPLVESSCNSTDQELLSKAFHSVSGFNVSWFQIQGSNCSKAPVSRVQLSSKNLSGAISWVYLRNMSKLQVLDVSGNSLQGHVPSWFWACSSLLEVNLSNNKFGGSIGFRPTSGNGSFSSVQKLNLSHNRFTNMVPLSGFSELKILDLSHNDLRTLPSGFQNLTKLQRLDLSSCSIKADVNPLSVLRSLNYLDLSNNALNGSFPSDFPPLKSLNFLNISHNNFTTLVHLDRYKRFGKSAFIDAGNNFIYDASKTPNLDSPPPRPIRIATFHPQKEKARTIILAVSSASAFVLVLLSTWVFYIYRKKRRLAKKNKWAISKPVPLAIKVEKSGPFAFETESGSSWVADLKEPSSAPVVMFEKPLMNLSFEDLIVATSHFGKDSLLAEGRCGPVYRAVVPGDIHVAIKVLENARDVDRDDAIAMFVDLSRLKHPNLLPLSGYCIAGKEKLILYEFMSNGDLGRWLYELPTGETNVEDWTGDTWEIQNGVGSQASSPEKMGWLTRHRISVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFEARIADFGFRNIGKGHNSNCTMETDVYCFGVVLMELLTGKPGSAETVGWVRKLVREGHGERALDESLRLSCDSESEMVESLRVAYLCTAESPGKRPAMQQVLGLLKDIHPHHGLEPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2236 668 FunFam Putative LRR receptor-like serine/threonine-protein kinase 350 464 - -
Glsi11g2236 668 Gene3D Phosphorylase Kinase; domain 1 349 464 - -
Glsi11g2236 668 Pfam Leucine rich repeat 59 115 IPR001611 GO:0005515
Glsi11g2236 668 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Glsi11g2236 668 SMART LRR_typ_2 222 245 IPR003591 -
Glsi11g2236 668 SMART LRR_typ_2 78 102 IPR003591 -
Glsi11g2236 668 SMART LRR_typ_2 198 221 IPR003591 -
Glsi11g2236 668 SMART LRR_typ_2 152 174 IPR003591 -
Glsi11g2236 668 Gene3D Ribonuclease Inhibitor 17 122 IPR032675 -
Glsi11g2236 668 Pfam Protein tyrosine and serine/threonine kinase 393 561 IPR001245 GO:0004672|GO:0006468
Glsi11g2236 668 SUPERFAMILY L domain-like 56 239 - -
Glsi11g2236 668 PRINTS Leucine-rich repeat signature 155 168 - -
Glsi11g2236 668 PRINTS Leucine-rich repeat signature 198 211 - -
Glsi11g2236 668 ProSiteProfiles Leucine-rich repeat profile. 224 245 IPR001611 GO:0005515
Glsi11g2236 668 FunFam Calmodulin-binding receptor kinase CaMRLK 131 241 - -
Glsi11g2236 668 Gene3D Ribonuclease Inhibitor 123 271 IPR032675 -
Glsi11g2236 668 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Glsi11g2236 668 ProSiteProfiles Protein kinase domain profile. 389 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2236 668 Gene3D Transferase(Phosphotransferase) domain 1 566 663 - -
Glsi11g2236 668 SUPERFAMILY Protein kinase-like (PK-like) 366 656 IPR011009 -
Glsi11g2236 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 659 - -
Glsi11g2236 668 Gene3D Transferase(Phosphotransferase) domain 1 465 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2236 Glsi-ChrGlsi11 15695857 15698282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2236 58 659 Receptor kinase-like Gene Family AT5G07280 31.318 5.10e-73 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Glsi11g2236 PK_Tyr_Ser-Thr 3.4e-20 CL0016