LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2232	ATGGCCGACGACAAGCAAATGTCTACCTCTGTTGTCAATGGGAACGATTCACTTACTGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAGCCCAAACAGACTATTAGTTACATGGCAGAACGCGTTGTGGGAACTGGCTCATTTGGAATTGTTTTCCAGGCAAAATGCTTAGAAACTGGTGAGCCAGTGGCTATTAAGAAGGTTTTACAAGACAGAAGATATAAAAATCGTGAACTACAGTTAATGCGTGTGATGGACCATCCAAATGTGATCTCCCTGAAGCATTGTTTCTTTTCCACTACAAGTACAAACGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGAGCATGTATCGGGTCTTAAAGCATTACAGCAATGCTAATCAGAGAATGCCACTCATCTACGTAAAACTTTATATGTACCAGATTTTCAGGGGGTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACGCATCAAGTTAAGCTATGTGATTTTGGAAGTGCGAAAGTGCTCGTCAAAGGTGAAGCTAATATATCCTACATATGTTCTCGTTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACGGAGTATACTACTTCGATTGATATTTGGTCAGCTGGCTGTGTCCTAGCTGAACTTCTTTTGGGCCAGCCATTGTTTCCTGGTGAAAGTGCAGTGGACCAGCTTGTGGAGATTATAAAGGTTCTTGGCACACCCACTCGGGAGGAAGTCCGTTGTATGAATCCCAATTACAATGACTTTAGGTTTCCCCAGATTAAAGCACACCCATGGCATAAGATATTTCACAAAAGGATGCCTCCAGAAGCAATTGATCTAGCTTCTCGGCTTCTGCAATACTCCCCTAGTCTTCGGTGCACAGCGCTAGATGCATGTGCTCATCCTTTCTTTGATGAACTCCGAGAACCCAATGCGCGCTTGCCAAATGGTCGTCCATTTCCAACTCTATTCAACTTCAAACAGGATTTATCTGGCGCATCTCCAGAGCTTGTTAACAAGTTACTACCTGATCATGTGAAGCGGCAAATAGGGCTACAATTTACCCACATGACAGGAACATGA	1143	0.4287	MADDKQMSTSVVNGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTNELFLNLVMEYVPESMYRVLKHYSNANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCTALDACAHPFFDELREPNARLPNGRPFPTLFNFKQDLSGASPELVNKLLPDHVKRQIGLQFTHMTGT	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2232	380	CDD	STKc_GSK3	35	327	IPR039192	-
	Glsi11g2232	380	FunFam	Glycogen synthase kinase-3 beta	24	119	-	-
	Glsi11g2232	380	SUPERFAMILY	Protein kinase-like (PK-like)	39	348	IPR011009	-
	Glsi11g2232	380	ProSitePatterns	Protein kinases ATP-binding region signature.	46	70	IPR017441	GO:0005524
	Glsi11g2232	380	Gene3D	Transferase(Phosphotransferase) domain 1	120	367	-	-
	Glsi11g2232	380	ProSiteProfiles	Protein kinase domain profile.	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g2232	380	Gene3D	Phosphorylase Kinase; domain 1	25	119	-	-
	Glsi11g2232	380	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	6	368	-	-
	Glsi11g2232	380	FunFam	Shaggy-related protein kinase kappa	120	367	-	-
	Glsi11g2232	380	Pfam	Protein kinase domain	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g2232	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Glsi11g2232	380	SMART	serkin_6	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2232	Glsi-ChrGlsi11	15670263	15674643	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2232	44	362	MAP Kinase Gene Family	AT3G59790	34.743	3.48e-57	190

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Glsi11g2232		Pkinase	2.1e-64	CL0016