Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2230 ATGGATCAGGCAAGAAAGCAAGAGAGTGATGAGGTGTTGGATCTTGTTGATGAAGGGATAGGTAAGAAATTACACCATTCGGTTGAAGGGGTTACAATTGATGCAGTAGCTGGAGGCAGCTTGGCTAATGGAGCTAGTGTAAGTGGAGATGGGACTTCAGCAGAGGCGAATAGTGATCCGGGATTGAATAAGGAACTAAAGGAGGGGCCTCAAGAAGCTATGGATCGGGACATGCCTGATCAGCAAAAAACCAATGACACATTCCACGGAGTTGATCAAGGAACAAGTTATAGTTCAAGAAATTTGGTTGATGAGGCAGTACTTGAGACCGTGGTTGTAATAAATTCTGCTGAAACAGAGCATTTGAATGGAGATAATAGGAAGTTGGAAGCAAAGGTTAATGAACCAGGGTTGAGCAAGGTATCCATGAACACACCTAAGAGGGCGTCTGAAGCAGATAAAAATTCATGTGTGATTGACATAAAGTGTGGTAGCTGCAAAGATTCTGGCGAGAATTTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCAGGGCAGCTATCAGATGCAACAACTGCTAGCACTACTAGCGGTGCTACTAGTACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGTATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAACTGAAAGGAAACAGATTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGGTGTTACTGATGACGGATTTATGGAAGAGTGGAATGAAAGGAGATTCATTGACAGCAGTAGCGCCTCATCAGGCCTGTGTGGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCTTGGTTTTTTCGTGTAAATATGTTCTAA 924 0.4361 MDQARKQESDEVLDLVDEGIGKKLHHSVEGVTIDAVAGGSLANGASVSGDGTSAEANSDPGLNKELKEGPQEAMDRDMPDQQKTNDTFHGVDQGTSYSSRNLVDEAVLETVVVINSAETEHLNGDNRKLEAKVNEPGLSKVSMNTPKRASEADKNSCVIDIKCGSCKDSGENLEGERICRICHLASGQLSDATTASTTSGATSTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVTDDGFMEEWNERRFIDSSSASSGLCGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2230 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 245 IPR013083 -
Glsi11g2230 307 MobiDBLite consensus disorder prediction 40 96 - -
Glsi11g2230 307 MobiDBLite consensus disorder prediction 45 59 - -
Glsi11g2230 307 ProSiteProfiles Zinc finger RING-CH-type profile. 171 247 IPR011016 GO:0008270
Glsi11g2230 307 Pfam RING-variant domain 179 240 IPR011016 GO:0008270
Glsi11g2230 307 SUPERFAMILY RING/U-box 176 243 - -
Glsi11g2230 307 PANTHER ZINC FINGER, RING-CH-TYPE 50 307 - -
Glsi11g2230 307 MobiDBLite consensus disorder prediction 61 83 - -
Glsi11g2230 307 SMART ringv_2 178 241 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2230 Glsi-ChrGlsi11 15658693 15661289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2230 108 306 C3H Transcription Factor Family AT5G05830 36.232 7.37e-30 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2230 11 15658693 15661289 Glsi11g2230 11 15658693 15661289 ECH