Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2208 ATGATCGAAACGGGTCGCCTTGCTTTTCTGATTCAGAAGCTGAACTTGGTTTGCCCGCTTCTGTGTTCTAATTTTGTACAGTTGAGCTCAAATGGTGTGTGTTGAGCTGTTCGCAATAGAATACTCAAGGATGCAAATGGTGATATTAGTGATCATCTACGCAATCATCTTCATCTAACAAATTGTATTCACTTGAAGAACCATATGCACAAGAACAGCCCCATACAGGCTGATAGATTACTTATGAGGGACCTTGTTGTGCTGCAGAGGTCACGCTCTCTCAGGGACCCTTCTGCAAGTCCTCTATCATGGAGTTCACCATCTATAATTGATGTGCTTTCCAAGAGAGCTAAAAATGATTCCATGATTCAGAAGGGAAGAAGGTCCGTAGGCATTGAGCGTGGGAAGGAAGGTCGGAGATTATCAGGAACCTCACCACCATTGGTTACTTTAGGTACATCAAAAGTTGCTCCAGGTGAGGTGAGCAGGGGTGATGATGGTGTACTGGCAACTAGTGAACGTAGTAGAAGGGGTGGAATGGGGGATGGGAGGAAAGTTGGGAGAGAAGAATCTGGCTGGAAGAGTGATTGGCCTGATTATTTGGGTGTCAGTGAAGAGCAACCTCTCAACCAACATGTCAAATGTTTGGCACAAGATGTCATTTTAAGGCACTCTGAATCTAAAGAGAGAAAGGGCAAAAAAAAGGGGAATCATGTTCGAGATGTACAAGTTAAGACCCTTTCCGAGCAGCAGATTGATGTTCCACCAGATAGTGATGATTTCGCATCTTCAAACATTCATCTTCATAAAAGGTCTCCTAGACAGGAGAAAACTATTGAGGAGCCAGCACCCAGCATGCGTGGTCAGGGAAGTGGATTAAATAGGGTAAAAAAGTGTAAACTCCGAAGTGCAAGAAGAACTCGGGCTGCTATGGCATCGAGAGATACTGGAGCGGAGAATGAATTGTCTGTGGCTTCCAACTCATTCACTCAAGGTTCAAACCACTATAAATATCATATGGAGGAGGCTGATGATCATGCGGATGAAAATTTTACCAGGGCTCCCAAAAATGGGTGTGGAATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATTGCTGGAAGAAGTTTATCTTGTGGCTTATCTGACTCGAGGTTAAATAAAGGGACACCGGCCACTAATGGAAATAATATCCTCAACGAGCCTTTGTCATCTGGTCACTCAAGCTCATCTAATAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCACCTAGATCTCAGGGAAGCACTGAGAATGCTTGCAGGGGGGATTATTATCCTGGGGATCTTGGTATATTTTCTGATAATTTGTACAAGCATGATATTGATTCTGACCTAGCTTCTGAAGCTAGATCTGGTGATCAGTATAAGTTGAGAGGGAATTGCCATGGCAGACACCAAAGCTTGACACAAAAATATATGCCACGGACCTTCAGAAATTTGGTTGGACAGAATTTAGTGGTGCAAGCTCTCTCAAATGCAGTCATAAAAAGAAAAGTTGGGTTGTTATATGTGTTTTATGGACCTCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCAAGAGCTTTAAATTGTCTGTCTTCAGAACACCCAAAACCTTGTGGCTTTTGTAACTCTTGCATGGCATATGATATGGGTAAGAGTAGAAGTATAAGAGAAGTTGGTCCAGTCAGTAATTTTGATTTTGAAAGCATCATGGATCTAATAGCTAATACGATTGTTTCTCAGCTTTCATCTCAATACAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAGCTGATTGTTGGAGTGCTATATCAAAGGTCATTGATCGAGGGCCTAGACGTGTAGTTTTCATCCTTGTCAGTTCAAGTCTTGATGTATTGCCTCATATAATTATATCTAGATGTCACAAATTCTTTTTTCCAAAGCTGAAGGATGCAGATATTATATATACATTGCACTGGATTGCTACCAAAGAAGGTCTGGAAATCGATATGGATGCCCTGAAACTCATTTCATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAATTGAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAATTGGCAGGGCTTATTTCTAATGAGAAATTGGTCGAGCTACTTGATTTGGCATTATCTGCTGACACAGTTAACACAGTGAAGAATTTGAGGGTAATCATGGAAACTGGTGTAGAGCCATTAACTTTAATGTCACAGCTTGCTTCAGTAATTACTGATATACTTGCGGGGACCTATGATTTCACAAAAGGAAGGCACCGATGGAAGTTCTTTCGCAGACAACCATTATCCAAAAAAGAAATGGAAAAGCTGCGCCAGGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAACTAACATGGCTCACAGCTGCTTTGCTTCAACTTGCTCCTGACCAACACTATATGTTGCCCACTCCATCTGATACTAGTTTCAATCATAGTCCCACAGCCCTAAACAATGCTGATGTGAGAGAAGCACCCAGAAGAACAAGCAGACATGTTGCCAGAGAGAGAGGTTTATCAATGGATGCTAGTATGGAAAATCTCCATGCTAGAATTTCAGCTGATAACATGACAAAGGGCCTTGGTTCAGAGAGAAAAAGACTTGCTGGGGCAGGGGTTGTTCCTCAACAGGCATCTTCACATGTTACCAATATGACTGGTACAAATAGCAGGCAAATTGGTAAAAACCGTAAAGGAATTGAAGAGATATGGGTAGAGGTGCTTGAGAGGATTCAAGTTTATGGTCTGAAAGAGTTCTTATATCAAGAAAGCAAGCTGATCTCGGTTAGTTTTGGTGCAGCCCCAACTGTGCAGCTAATGTTTAGTTCCCAACTGACCAAATCTACCGCTGAGAAGTTTAGGGGCCACATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTGTGACAATAGAAATTAGATATGATTCAAATGAAGATGCTGGGGCAGGGGTTAATCTGCCACTTGTCTTGCATGCTACTCAAGATAGTTCGTCTCAGATTAGAGACTTAAATGGAGTTGGCGCTCAAACACATGCTTTGCAACCTGATTCTATTGAAAAGAGAAATGGTGAAATTGTAGAATTAGCAGGTTCTCCCAGGAAGTGCAAGAGTAATGAGCATCAGGTAGCATCTCATAAATGTTTAGAAGGTACATGTGTAGGACAAGCATCAGCTTCCCACAAAATGCCAACTGTGAAGCCACACTCAGAAAGAAGAAAGCTTAGGGAACAAGGACAGATTCATAGTCTCATTAGAAGTAAAGTATCCCTTGCTCACGTAATTCAGCAGGCAGAAGGATGTAAACAACGAAGTGGGTGGCCAAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACGAGAAAATCTGAGATTGGAACCGAGATCAAGGAGCTTACTATGCTGGAAAGCATCTAGAGTAACCCGTCGGAAGCTTTCACGTTTGAAGGTTCGGACCCGAAGGCCACATGCTTTGCTAAACCTTGTCTCATGTGGGAATTGTCTCTCTACTAGATCTCCAAGGAAACTGATTGCTGAGGATTTCAAAGAGTCAAACAGCAGCAAGTTTAAGAATAAAATAACCTTCAGCTTAAAGCAGTGGGGGCACACAAGGATCCACTATACAGTTGGGGTAACCGGGAAGCGCTTCCTCCTTGCTGCTGTAAACTCCAAATCAGGGAAGCGCCAAGAGGTAATCTCAATTAAAACTACTGTTTCTTCGTGCCTTGTCTTCACTTTCTTGTCAAAAGAGCAAGAACGAAGATCAGAAAGGAAATGGGGGCTATTCTATCATTTGCAAGAAAATTTGGAGAATACCCTGGTGGCTGGATGCTATGCTATCTCCTTTTCAGAAAAAGCAACATCATGA 3996 0.4222 MIETGRLAFLIQKLNLVCPLLCSNFVQLSSNGVCXAVRNRILKDANGDISDHLRNHLHLTNCIHLKNHMHKNSPIQADRLLMRDLVVLQRSRSLRDPSASPLSWSSPSIIDVLSKRAKNDSMIQKGRRSVGIERGKEGRRLSGTSPPLVTLGTSKVAPGEVSRGDDGVLATSERSRRGGMGDGRKVGREESGWKSDWPDYLGVSEEQPLNQHVKCLAQDVILRHSESKERKGKKKGNHVRDVQVKTLSEQQIDVPPDSDDFASSNIHLHKRSPRQEKTIEEPAPSMRGQGSGLNRVKKCKLRSARRTRAAMASRDTGAENELSVASNSFTQGSNHYKYHMEEADDHADENFTRAPKNGCGIPWNWSRIHHRGKTFLDIAGRSLSCGLSDSRLNKGTPATNGNNILNEPLSSGHSSSSNKSDAEALPLLVEAPRSQGSTENACRGDYYPGDLGIFSDNLYKHDIDSDLASEARSGDQYKLRGNCHGRHQSLTQKYMPRTFRNLVGQNLVVQALSNAVIKRKVGLLYVFYGPHGTGKTSCARIFARALNCLSSEHPKPCGFCNSCMAYDMGKSRSIREVGPVSNFDFESIMDLIANTIVSQLSSQYRVFIFDDCDTLSADCWSAISKVIDRGPRRVVFILVSSSLDVLPHIIISRCHKFFFPKLKDADIIYTLHWIATKEGLEIDMDALKLISSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELAGLISNEKLVELLDLALSADTVNTVKNLRVIMETGVEPLTLMSQLASVITDILAGTYDFTKGRHRWKFFRRQPLSKKEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQHYMLPTPSDTSFNHSPTALNNADVREAPRRTSRHVARERGLSMDASMENLHARISADNMTKGLGSERKRLAGAGVVPQQASSHVTNMTGTNSRQIGKNRKGIEEIWVEVLERIQVYGLKEFLYQESKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSVTIEIRYDSNEDAGAGVNLPLVLHATQDSSSQIRDLNGVGAQTHALQPDSIEKRNGEIVELAGSPRKCKSNEHQVASHKCLEGTCVGQASASHKMPTVKPHSERRKLREQGQIHSLIRSKVSLAHVIQQAEGCKQRSGWPKRKAVSIAEKLERENLRLEPRSRSLLCWKASRVTRRKLSRLKVRTRRPHALLNLVSCGNCLSTRSPRKLIAEDFKESNSSKFKNKITFSLKQWGHTRIHYTVGVTGKRFLLAAVNSKSGKRQEVISIKTTVSSCLVFTFLSKEQERRSERKWGLFYHLQENLENTLVAGCYAISFSEKATS 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2208 1331 MobiDBLite consensus disorder prediction 391 422 - -
Glsi11g2208 1331 MobiDBLite consensus disorder prediction 167 194 - -
Glsi11g2208 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 712 IPR027417 -
Glsi11g2208 1331 FunFam DNA polymerase III subunit gamma/tau 663 725 - -
Glsi11g2208 1331 CDD HLD_clamp_pol_III_gamma_tau 662 725 IPR045085 -
Glsi11g2208 1331 SMART AAA_5 521 662 IPR003593 GO:0016887
Glsi11g2208 1331 NCBIfam DNA polymerase III subunit gamma/tau 488 836 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Glsi11g2208 1331 MobiDBLite consensus disorder prediction 391 424 - -
Glsi11g2208 1331 MobiDBLite consensus disorder prediction 270 292 - -
Glsi11g2208 1331 Gene3D - 481 659 IPR027417 -
Glsi11g2208 1331 Coils Coil 798 825 - -
Glsi11g2208 1331 Pfam DNA polymerase III, delta subunit 504 662 - -
Glsi11g2208 1331 Gene3D - 663 725 - -
Glsi11g2208 1331 MobiDBLite consensus disorder prediction 130 194 - -
Glsi11g2208 1331 SUPERFAMILY post-AAA+ oligomerization domain-like 733 836 IPR008921 GO:0003677|GO:0006260
Glsi11g2208 1331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 491 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2208 Glsi-ChrGlsi11 15517631 15525462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2208 488 786 Core DNA Replication Machinery Family AT1G21690 23.203 1.13e-13 72.0