Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2206 ATGGCTTCAGGGGCTATCTGTTCGTCCCAGCGGCGGAGGAGGTCGCCGTCTTTGGAAGCATTTCTTGCTCCGGTTGACCTGACAGATATTGCCCTCGTTCAAACTCTCGTGTCTGTTGCTAGCGAGCTTGTCTCAAGCTTCTCTGACCGTTCGTCCTTCTTTCAGCGCAGGAATTCGCGGTCGCTTATCCGAAAAGTCGAGGTTTTTCAGTTGCTTTTGGAGTATCTGCGGGATGCCCGCACGAATATTCCAACGACAGCGGTGGTTTGTTTAAAGGAGCTTTATTATCTACTGTATCGGTCGAAGATTCTTCTTGATTATTGCTTGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAACCATTCAATTTCTGGTCATTTCCATGATTTGAACCAAGAAATATCGGCTCTTTTGGATGTATTCCCGATTAAGAACATTGAATTGAGCGACGATGTTAGGGAACAGATTGAGCTATTGCAGAAACAATCACGGAGGGCTAAGCTGTTTATTGACAAAAAAGATGATGCGCTCAGGATTAAATTCTTGTCATTTCTTGATGAGTTTGAGAATGGGCGAATTCCTGATTCGGCAGGGATACGATCCTTCTTTGTAGAGAAATTGCAGATTCTGGATGCCAGGAGTTGTAGAACAGAAATTGAGTCGTTGGAAGAGCAGATTGTTAATCACGAGGGAGATGTTGAGCCAACAATTTCTGTGCTTAATGGGTTGGTTGCATTGACACGCTACTGCAGATTTTTTCTTTTTGGATTTGAGGAAGATGAACTAGAATTGAGAAATAGGAATCAGAAAAAACTTAAAAAGAGGTTGATTATTCAAGAAATTGCTGAAACATTTGTAACTATTCCAAAGGACTTTCACTGCCCAATATCGTTGGAGTTGATGCTAGACCCAGTGATAATCTCCACAGGACAAACATATGAACGGAGTTTCATATCCCGGTGGATGGAAGAAGGGCATTGTACTTGTCCAAAAACCGGGCTAATGCTTACCCACACCCAGATTGTTTCTAATGGAGCTCTAAAGAATTTGATCATGCAGTGGTGCACTGCACATGGAATCCCTTATGAGCCACTGGAGAGGATAAATGCATTGCCGGGAAGTTTTGCATCAGCTTCTCCTACCAAAGCTGCCCTTGAAGCCAATAAAGCAACAGCATTGCTTCTCATTCAACAGCTGGCAAATGGATCAGGAGCTGCAAAGACTGTAGCTGCTCGGGAGATACGATTGCTAGCAAAAACAGGTAAAGAAAATCGTGCCTTCATTGCAGAAGCCGGAGCAATTCCCTATCTGCAGAAACTACTTTCATCTCCTAACGCTGTTGCTCAGGAGAATTCAGTGACTGCATTGCTCAACCTATCTATATACGAGCAAAACAAAAGCCGGATAATGGAGGAGGAAGGTTGTCTGGGATCAATAGTTGATGTGTTGAAATTTGGTCACACAACTGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTCTCTGCCGTCCATGACTATAAGAAGAGAATTGCAGATAAGGGGGGAGCAGTTGAAGCCCTGGCAGGGCTGCTGCAAGAGGGTGCCCTAAGAGGAAAGAAGGATGCAGTAACAGCTTTATTCAATCTTTCCACCCACAGTGAAAATTGTGTTAGACTGATAGAGGCAGGGGCTGTAACAGCTCTAATTGGGGCTTTGTGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCCTCGCTTTGATTGTTCGGCAGCCTATTGGAGCCAAAGTAGTGATGGGGGAGGAAGTGGCACTAACTGGATTGATAGGAATGATGCGATGTGGGACACCGAGGGGTAAAGAGAATGCTGTTGTGGCCTTGCTGGAATTGTGCCGCAGTGGAGGTACAGCTGCAGCTGAGAGAGTGGTTAGGGCACCAGCTTTGGCTAGTTTGCTTCAAACCCTGCTTTTTACAGGGACAAAACGAGCAAGAAGGAAAGCGGCTTCACTTGCTAGAGTGTTTCAGAGATGTCAAAATGCATCTCTGCATTATGGTGGGTTAGGTGTAGGGTATGCATTTGCTAGCAATTCATCTGCAAATAGGGATACAAGCTTTGCTGGCGATGTATCAGTATCAATGTCCATTTCTATACCTGTTTTGTAG 2148 0.4493 MASGAICSSQRRRRSPSLEAFLAPVDLTDIALVQTLVSVASELVSSFSDRSSFFQRRNSRSLIRKVEVFQLLLEYLRDARTNIPTTAVVCLKELYYLLYRSKILLDYCLQSSKLWLLLQNHSISGHFHDLNQEISALLDVFPIKNIELSDDVREQIELLQKQSRRAKLFIDKKDDALRIKFLSFLDEFENGRIPDSAGIRSFFVEKLQILDARSCRTEIESLEEQIVNHEGDVEPTISVLNGLVALTRYCRFFLFGFEEDELELRNRNQKKLKKRLIIQEIAETFVTIPKDFHCPISLELMLDPVIISTGQTYERSFISRWMEEGHCTCPKTGLMLTHTQIVSNGALKNLIMQWCTAHGIPYEPLERINALPGSFASASPTKAALEANKATALLLIQQLANGSGAAKTVAAREIRLLAKTGKENRAFIAEAGAIPYLQKLLSSPNAVAQENSVTALLNLSIYEQNKSRIMEEEGCLGSIVDVLKFGHTTEARENAAATLFSLSAVHDYKKRIADKGGAVEALAGLLQEGALRGKKDAVTALFNLSTHSENCVRLIEAGAVTALIGALWNEGVAEEAAGALALIVRQPIGAKVVMGEEVALTGLIGMMRCGTPRGKENAVVALLELCRSGGTAAAERVVRAPALASLLQTLLFTGTKRARRKAASLARVFQRCQNASLHYGGLGVGYAFASNSSANRDTSFAGDVSVSMSISIPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2206 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Glsi11g2206 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Glsi11g2206 715 Gene3D - 558 663 IPR011989 -
Glsi11g2206 715 SUPERFAMILY RING/U-box 277 362 - -
Glsi11g2206 715 CDD RING-Ubox_PUB 289 340 IPR045210 -
Glsi11g2206 715 FunFam RING-type E3 ubiquitin transferase 285 361 - -
Glsi11g2206 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Glsi11g2206 715 PANTHER U BOX DOMAIN-CONTAINING 60 672 - -
Glsi11g2206 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Glsi11g2206 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Glsi11g2206 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Glsi11g2206 715 SMART arm_5 505 546 IPR000225 GO:0005515
Glsi11g2206 715 SMART arm_5 421 461 IPR000225 GO:0005515
Glsi11g2206 715 SMART arm_5 547 585 IPR000225 GO:0005515
Glsi11g2206 715 SMART arm_5 463 504 IPR000225 GO:0005515
Glsi11g2206 715 Coils Coil 212 232 - -
Glsi11g2206 715 Gene3D - 374 557 IPR011989 -
Glsi11g2206 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Glsi11g2206 715 FunFam RING-type E3 ubiquitin transferase 365 686 - -
Glsi11g2206 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2206 Glsi-ChrGlsi11 15512050 15514197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2206 1 715 U-box Gene Family AT1G29340 68.256 0.0 920