Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2204 ATGCAATTCCAGGCATTGATATGTCAGGGTAGAACGGTGCAGTCTGGACTGATTGCATGTTCTCCTGGTTGTATACCCAATGCTTCTACACTTGAGGCAAGTTCGTGTGCATTTGGTTATCAGGAGGATTTGTTGGTTTGGATTGCAAAACTCACGAAGGGAATCATGGGTTTCACTGGGGTTGGAGTTTCCTTAATCGTGATGGATGATGCTCAGGGAAGTTCTAGTTCCCTGCCTCCTTTCCTGACAAAGACTTATGAGATGGTGGACGATCCTTCCACGGATTCCATTGTTTCCTGGAGTGCCAATAATAGAAGTTTCATAGTTTGGAATTCGCTAGAATTTTCAACGGATTTGCTGCCAAGATTCTTCAAGCACAATAACTTCTCGAGTTTCATCAGACAGCTGAACACATATGGCTTTAGAAAAGTTGACCCAGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCATATCTTTTAAAGAATATCCATAGACGAAAGCCAGTTCATAGCCATTCTTTACAGAATCTCCAAGGACAAGGAGCTTCTCCATTAACAGAATCGGAAAGGCAGAGTTTAAAAGACGAAATAGAAAGGCTTAAACATGAAACAGAACAACTTCGTCTAGAGTTACGGAGACATGAACACGAGTCGCAAGAAAATGAGATACAAATAGAATGCTCAAAGGATCGTTTGAGAAATTTGGAAAGGAATCAACAAAAGATGTTCTCTTCTGTTTTTCAAGTGCTGCAGAAACCTGGAATTTCCTTAAATCTCTTGCAACTGTCAGAAACCCTGGCTAGAAAACGAAGGCTTCCAAGAAGTGGTTACTTTTGTGATGAAGCTGGCTTTGAAGATGCTATGGAAGCCTCCCCAATGTTACCTAGAGAGAGTGGAGATAGTACTTCTGTTTTGACATTAAACATGGAGCGATTGAATCAGCTGGAGTCATCGCTGGTATTTTGGGAGAACATTGTGCATGATGTTGGCGATACATTTGTTCATAGTCATTCAAACATTGATTTTGATGAATCTACAATTTGCGCTGATAGTCCTGCAATCTCTTGTGTGCAACTAGATGTTGAACTTCGGCCTACGTCATCTGTAATTGACATGAACTCTGAGCCAGCAGCAGCAGCAGCTGTTCCTGAGCCTGGTGCGTCAAAAGAACAACCTGTAGGAACAACCACTGTAGCAACCGGTGTCAATGATGTATTCTGGGAACAGTTCTTGACAGAGAATCCCGGTTCATCAGAAACACAGGAAGAGCAGTCAGAACAAAAGGATTCCGATAACAGAAAGACTGAAGGAAAAGCTGGTGACCGTATTAAATTTTGGTGGAATATGAGCAATGTAAATAACCTTCCAGAACAGATGGGGCATCTTAGTCAAACAGAGAAAACTTAG 1419 0.4158 MQFQALICQGRTVQSGLIACSPGCIPNASTLEASSCAFGYQEDLLVWIAKLTKGIMGFTGVGVSLIVMDDAQGSSSSLPPFLTKTYEMVDDPSTDSIVSWSANNRSFIVWNSLEFSTDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPYLLKNIHRRKPVHSHSLQNLQGQGASPLTESERQSLKDEIERLKHETEQLRLELRRHEHESQENEIQIECSKDRLRNLERNQQKMFSSVFQVLQKPGISLNLLQLSETLARKRRLPRSGYFCDEAGFEDAMEASPMLPRESGDSTSVLTLNMERLNQLESSLVFWENIVHDVGDTFVHSHSNIDFDESTICADSPAISCVQLDVELRPTSSVIDMNSEPAAAAAVPEPGASKEQPVGTTTVATGVNDVFWEQFLTENPGSSETQEEQSEQKDSDNRKTEGKAGDRIKFWWNMSNVNNLPEQMGHLSQTEKT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2204 472 SMART hsfneu3 77 170 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2204 472 MobiDBLite consensus disorder prediction 174 193 - -
Glsi11g2204 472 PRINTS Heat shock factor (HSF) domain signature 119 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2204 472 PRINTS Heat shock factor (HSF) domain signature 81 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2204 472 PRINTS Heat shock factor (HSF) domain signature 132 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2204 472 Coils Coil 187 242 - -
Glsi11g2204 472 ProSitePatterns HSF-type DNA-binding domain signature. 120 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2204 472 Gene3D - 73 171 IPR036388 -
Glsi11g2204 472 MobiDBLite consensus disorder prediction 417 446 - -
Glsi11g2204 472 MobiDBLite consensus disorder prediction 176 192 - -
Glsi11g2204 472 Pfam HSF-type DNA-binding 81 170 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2204 472 SUPERFAMILY "Winged helix" DNA-binding domain 76 170 IPR036390 -
Glsi11g2204 472 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 73 396 IPR027725 -
Glsi11g2204 472 MobiDBLite consensus disorder prediction 426 445 - -
Glsi11g2204 472 FunFam Heat shock transcription factor 1 74 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2204 Glsi-ChrGlsi11 15498626 15502952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2204 74 472 HSF AT4G18880 53.171 4.68e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi11g2204 HSF_DNA-bind 6.4e-31 CL0123