Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2182 ATGATCTTACGACGTAAGGTGTATAATCATGAGCAGACGAGGGGAGGTTACATTCAAAACGACCTGTCAACGCTATGCTTAACATGCATTGCTAAGCCTGCAAGCATGGCGTTCCCAAACCACTCCATGCCAGTTTCAGCTCTGAGAAAGATGGGAAGGGGGAAGATTGAGATCAGGAGGATCGAGAATACCACCAATCGCCAAGTCACCTTCTGCAAGCGCAGAAATGGGCTGCTCAAGAAGGCATATGAACTATCTGTGCTCTGTGATGCAGAGGTTGCTTTAATCGTCTTCTCTAGCCGCGGCCGTCTCTATGAATATTCTAATAACAGTGTCAAAACAACTATAGATAGGTACAAGAAATCATGTTCAGATGTTTCTGGTGGTGGATCTACTGCTGAGGCTAATGCTCAGTATTACCAGCAAGAAGCTGCCAAACTGCGTGCACAGATTAGTAACCTGCAGAATCACAACAGGCAAATGATGGGTGAAGCTTTAGGCAATCTGAGTGCCAAAGAACTCAAAAACCTGGAGACGAGGTTGGAAAAGGGGATTAGCAGAATTCGTTCCAGAAAGAATGAGCTGTTGTTTGCTGAAATTGAATACATGCAGAAGAGGGAAATAGACTTGCACAATAACAACCAGTTTCTTCGAGCAAAGATAGCTGAGGTTGAGAGGAGCGAGCAAAACATGAATGTGGTGGGTGGTGGAGGCACAAACTATGAACCTATGGAATCTGAGCAGCAATTTGACAATCGAGGTTACTTCCAAGTCACTGCATTACAACCCAACAACAATCAGTATCCACGCAAAGGCAGCTTTGATGTGTTTGCTGAAGCTAGCGAAGGGATCATAAGATGGAGTTGGGAGTTTCTTGTACTAGTATTTGGGAGTGTAGTATGA 903 0.4463 MILRRKVYNHEQTRGGYIQNDLSTLCLTCIAKPASMAFPNHSMPVSALRKMGRGKIEIRRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKTTIDRYKKSCSDVSGGGSTAEANAQYYQQEAAKLRAQISNLQNHNRQMMGEALGNLSAKELKNLETRLEKGISRIRSRKNELLFAEIEYMQKREIDLHNNNQFLRAKIAEVERSEQNMNVVGGGGTNYEPMESEQQFDNRGYFQVTALQPNNNQYPRKGSFDVFAEASEGIIRWSWEFLVLVFGSVV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2182 300 Coils Coil 174 194 - -
Glsi11g2182 300 ProSiteProfiles K-box domain profile. 137 227 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2182 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 60 107 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 Gene3D - 63 127 IPR036879 GO:0003677|GO:0046983
Glsi11g2182 300 Pfam K-box region 135 221 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2182 300 PRINTS MADS domain signature 88 109 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 PRINTS MADS domain signature 73 88 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 PRINTS MADS domain signature 53 73 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 ProSitePatterns MADS-box domain signature. 53 107 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 FunFam agamous-like MADS-box protein AGL11 63 146 - -
Glsi11g2182 300 CDD MADS_MEF2_like 52 125 IPR033896 GO:0000977|GO:0045944
Glsi11g2182 300 SUPERFAMILY SRF-like 52 122 IPR036879 GO:0003677|GO:0046983
Glsi11g2182 300 ProSiteProfiles MADS-box domain profile. 51 111 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 SMART madsneu2 51 110 IPR002100 GO:0003677|GO:0046983
Glsi11g2182 300 PANTHER SERUM RESPONSE FACTOR HOMOLOG 51 230 - -
Glsi11g2182 300 Coils Coil 137 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2182 Glsi-ChrGlsi11 15300727 15311305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2182 34 264 MADS-box Gene Family AT3G58780 64.407 1.88e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g2182 K-box 3.4e-28 No_clan