Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2178 ATGCCGGGGAACAATTATAACTGCAGTCCTGGCACACCCAGATCTAGAGTAGAAAGGCTTCTGAGGGAAAGGGAGATAAGGAAATTCAACAAGTATATCCAGCCGGCTGAGGATGCAAGAGACAGCAACAAAGAGCCAGAACAATTCTATGGTGAATCGAGTACAAGTGAGAATGACATCTGGGGTACCCTCCTGGAGGAAGAGATATTGGAAAAGGTTGCAGCTACAAGATTGTCTGCAGATAATTGTCATAGGCAAGATGAGCGGCCATCCAGACAACGCTTGTTGGTGGTGGCCAACAGGTTGCCTGTCTCTGCCATTAGAAGGGGTGAAGAATCATGGCAACTTGAGATCAGTGTAGGGGGGCTAGTCAGTGCAATTTTAGGTGTAAAGGAGTTTGACACCAGATGGATTGGGTGGGCTGGTGTGAATGTTCCTGATGAAAAGGGGCAGATAGCATTGACTAAAGCTTTAGCTGCAAAGAGATGCATTCCAGTATTTCTCGATGAGGAGATAGTTCATCAATACTACAATGGTTACTGCAACAACATCTTATGGCCTCTCTTTCATTACCTTGGGCTTCCACAAGAGGACCGACTTGCTACCACTCGTAGTTTCCAATCTCAATTTGATGCATATAAGAGAGCAAACCAAACGTTTGCTGATGTGGTAAATCAGCATTATGAAGAAGGAGATGTCGTTTGGTGCCATGATTACCACCTAATGTTTCTTCCAAAATGTTTGAAAGAACATAATAAAAAAATGAAAGTTGGCTGGTTTCTCCACACGCCTTTTCCTTCCTCAGAAATACATAGGACACTGCCATCCAGATCAGAACTGTTGAGATCAGTACTTGCTGCTGACTTGGTGGGATTTCATACTTACGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACGCCACAAGGAGTAGAAGATCATGGGAAGCTGACTCATGTAGCTGCGTTTCCTATTGGGATTGACTCTGACCGATTTATCCGGGCCCTTGAACTCCCTCAAGTCCAGGATCACATAAAAGAATTGAATGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAGGGAATCCCCCAGAAAATCTTGGCATTTGAAAAGTTCCTTGAGGAGAATCCTGACTGGCATGATAAAGTTGTCTTGCTGCAAATTGCTGTTCCAACAAGGACTGATGTTCCTGAATACCAAAAGCTTACCAGCCAGGTGCATGAGATTGTTGGGCGCATTAATGGAAGATTTGGAACACTTACTACTGTCCCAATACATCACCTGGATCGGTCCCTGGACTTTCATGCATTATGTGCACTCTATGCGGTCACGGATATAGCACTCGTTACATCTTTAAGGGATGGGATGAACCTTGTCAGCTATGAATTTGTTGCATGCCAAGCTTCTAAGAAGGGGGTTCTCATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAATATCACAGAGGTTGCTTCCTCTATTGGTTATGCCTTGAACATGGCGCCTGATGAAAGAGAAAAACGGCACCGGTTTAACTTCAAGCACGTGACTACTCATACATCTCAAGAGTGGGCTGCAACATTTGTGAGTGAACTGAATGACACCATTGTTGAAGCTCAACTTAGGACAAGACAAGTTCCGCCATTACTTCCCAATGAAGCTGCAGTTGATTGTTACTCAAAATCCAATAATCGATTAATCATACTGGGTTTCAATGTCACTTTGACTGAACCAGTGGATGCCCTTGGGAGGGGTGGTCAAATCAGAGAACTGGAGCCTAAATTGCACCCTAATTTAAAAGAGTCTTTAAAGAAGTTATCTGATGATGCAAAGACAACAATTGTTGTTCTGAGTGGGAGCGATCGAGGTGTCCTGGACAAAAACTTTAGTGAATACAACATGTGGCTGGCAGCAGAAAATGGGATGTTCTTACGTCTTACTACCGGTGAATGGATGACAACCATGCCTGAAAATTTAAATATGGATTGGGTTGATAGTGTAAAGCAAGTTTTTGAGTACTTTACTGAAAGAACACCACGATCTCATTTTGAGTTGCGTGAGACTTCAATTGTATGGAATTACAAGTACGCAGATGTTGAATTTGGAAGGATTCAAGCAAGAGATATGCTTCAGCATCTTTGGACAGGCCCAATATCAAATGCATCCCTTGACGTTGTCCAAGGTGGTCGATCTGTTGAGGTTCGGGCACTTGGTGTCTCAAAGGGAGCAGCTATTGATCGGATCCTGGGAGAGATAGTTCATTACAAAGGCATGAAGGCACCAATTGATTACGTTCTTTGTGTTGGGCACTTTCTACAAAAGGATGAAGATGTCTATACATTTTTCGAGCCAGAGCTTCCTTCTGAAACGCCACCAGCAAAAGCTATGCTATCCAATTCTTACAGGCCATCTCTGCCAAAATTTTCAGCCAGCAAAAGTGGGTCTAAGGCAGCTCAACTTAAGAAGCAACGCTCATTGTCAACTTTAGAAAGGAGAGGAATAGATCATAGAACTACGGTTCCTTGGCAGCCAACACATCGTGATAGAATATCATTGCAGGAGGGTTCTTCAGTGCTTGATCTTAAAGGTGATAATTACTTCTCTTGTGCTGTTGCACGAAAGAGATCGAACGCGCGATATCTCCTTAAAACATCAGATGATGTTGTCAATCTCTTGAAGGACCTGGCAGATCATTCATCATCACCATCAAGTCCTTCAGGTTGA 2802 0.434 MPGNNYNCSPGTPRSRVERLLREREIRKFNKYIQPAEDARDSNKEPEQFYGESSTSENDIWGTLLEEEILEKVAATRLSADNCHRQDERPSRQRLLVVANRLPVSAIRRGEESWQLEISVGGLVSAILGVKEFDTRWIGWAGVNVPDEKGQIALTKALAAKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKRANQTFADVVNQHYEEGDVVWCHDYHLMFLPKCLKEHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPQGVEDHGKLTHVAAFPIGIDSDRFIRALELPQVQDHIKELNERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDIALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVASSIGYALNMAPDEREKRHRFNFKHVTTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNEAAVDCYSKSNNRLIILGFNVTLTEPVDALGRGGQIRELEPKLHPNLKESLKKLSDDAKTTIVVLSGSDRGVLDKNFSEYNMWLAAENGMFLRLTTGEWMTTMPENLNMDWVDSVKQVFEYFTERTPRSHFELRETSIVWNYKYADVEFGRIQARDMLQHLWTGPISNASLDVVQGGRSVEVRALGVSKGAAIDRILGEIVHYKGMKAPIDYVLCVGHFLQKDEDVYTFFEPELPSETPPAKAMLSNSYRPSLPKFSASKSGSKAAQLKKQRSLSTLERRGIDHRTTVPWQPTHRDRISLQEGSSVLDLKGDNYFSCAVARKRSNARYLLKTSDDVVNLLKDLADHSSSPSSPSG 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2178 933 MobiDBLite consensus disorder prediction 32 55 - -
Glsi11g2178 933 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825|GO:0005992
Glsi11g2178 933 CDD HAD_TPP 592 811 - -
Glsi11g2178 933 Gene3D Glycogen Phosphorylase B; 85 340 - -
Glsi11g2178 933 Gene3D Glycogen Phosphorylase B; 341 543 - -
Glsi11g2178 933 Gene3D - 683 763 - -
Glsi11g2178 933 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 86 922 IPR001830 GO:0003824|GO:0005992
Glsi11g2178 933 MobiDBLite consensus disorder prediction 32 47 - -
Glsi11g2178 933 FunFam Alpha,alpha-trehalose-phosphate synthase 617 688 - -
Glsi11g2178 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 86 340 - -
Glsi11g2178 933 SUPERFAMILY HAD-like 620 779 IPR036412 -
Glsi11g2178 933 Gene3D - 620 777 IPR023214 -
Glsi11g2178 933 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Glsi11g2178 933 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824|GO:0005992
Glsi11g2178 933 Pfam Trehalose-phosphatase 621 817 IPR003337 GO:0003824|GO:0005992
Glsi11g2178 933 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 683 763 - -
Glsi11g2178 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 341 543 - -
Glsi11g2178 933 CDD GT20_TPS 94 559 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2178 Glsi-ChrGlsi11 15271944 15282982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2178 1 928 Trehalose Biosynthesis Gene Families AT1G78580 73.990 0.0 1414