Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2156 ATGAAGGCCAACACCAGCACCGCCAATAGAGACAAAGCACTTGCTCAGTACAGTGCTGATGCTGGGATTTTGGCCGAGTTTGAGCATTCTGCTGTGTCTGGGAAATCATTCGACTACTCAAGGTCGTTGCTTTATCCTCCACAATCAGTGTCGGAGGAGAAAATGACGGCTTTTCTGTCAAAAATCCGAAGAGGGGGTCTCATTCAGCCCTTTGGTTGTTTGCTTGCAATTGAAGAAGCCACTTTCAGAATCATCAGCTACAGTGAGAATTGCTTTGAATTGTTGGGTTTAGAGAGACAATTTTATTCACAAAAATTTATGGGTCTGATTGGAGTTGATGCTACTACCCTGTTTACGCCTTCTTCATGCGCTTCCTTTGCAAAAGCTGTGGCATCAAAGGATATTTCACTTTTGAACCCGATTTGGGTCTATTCAAGGACAACTCAGAAGCCATTCTATGCTATACTGCATAGGATTGATGTGGGGATTGTGATTGATATAGAGCCTGCACGGTCGAGTGATCCTGCATTGTCACTTGCTGGCGCTGTGCAGTCACAGAAACTTGCTGCTCGGGCAATTTCAAGGCTGCAATCTCTTCCTGGGGGAGATAGTGGTGTGTTGTGTGACAAGGTTGTTGAAGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTCCACGAGGATGATCATGGTGAAGTTGTATCTGAAATCAGAAGGTCAGATTTAGAGCCCTATTTGGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTCAATTCAACCCTTCGGTCACCCCATGGATGTCACACACAGTACATGGCAAACATGGGCTCAATTGCCTTTCTGGTGATGGCAGTTATAGTCAATGGAACTGATACAACTAAGCTTTGGGGTTTGCTAGTTTGCCATCACACTTCACCACGCCATGTGCCTTTCCCCCTTCGCTATGCTTGTGAGTTCCTCATGCAGGCTTTTGGACTGCAGCTGTACTCGGAGATGCAACTAGCATCACAAATGGCAGAGAAGAGAATTCTCAGAACTCAAACCTTGCTATGTGACATGCTCCTCCGTGATTCCCCATTTGGTATTGTTACTCAATCTCCTAATATAATGGATCTTGTGAAGTGTGATGGGGCAGCATTGTATTATGGTGGAAATTGTTGGCTGCTAGGCACTGCCCCGACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTGCTTAGTAATCATGAGGACTCCACAGGTTTGAGCACAGATAGTTTGGCTGATGCTGGTTATCCAGGTGCTGCTTTACTGGGGAATTCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCGAGAGATTTCTTGTTCTGGTTCAGGTCTCACGCTGCCGAGGAACTTAAATGGGGAGGAGCCAAGCACCATTCAGAGGATAAAGATGATGGAGGAAAAATAAACCCAAGATCATCATTTAAAGCTTTCCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGAATCATTCGTGGACACAGAGAACTGTGGTCCTAATACTCTCAATAATGCTCAGCATACTGATACTACAATGGATGGAATTGATGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTAATTGAGACAGCAACAGTTCCGATTTTTGGAGTTGATTCTGCTGATCTAATTAATGGATGGAATGCAAAAATTGCTGAATTAACAGGGCTGCACACTAGTGAAGCTATTGGAAAGTCCCTAGTAAATGAAGTAGTCCATGACGACTCATGTGAAGCTGTTGAAAATTTTCTAAGCAGAGCCTTGCAAGGTCAGGAGGACAAAAATGTTGAGTTGAAATTAAAGCATTTTGGGCTTCATCTACAAAAGTCAGTTGTATATATCATGGCCAATGCCTGCACAAGTAGGGATCACACAAATGCTGTTGTTGGGGTATGCTTTGTGGGTCAAGATATCACTTATGAGAAAGTTTTTCAGAACAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATCGTCCACAGTCTCAGTCCATTGATTCCACCCATATTTGCTTCTGATGAGAACGCCTGCTGCTCAGAGTGGAATGCAGCCATGGAAAAGATAACTGGCAGGAAGAGAAATGACGTTATAGGAAAAGTGCTTCCAGGGGAAATCTTTGGGGGTTTATGTCAACTGAAAAATCAAGATACACTGACCAATTTTATGATTTTATTGTATCGAGGAATCAGTGGTCAAGATGCTGATAAGTTCTCATTTGGTTTTCTTAATAGAAAAGGAGAATTTGTAGATGTTTTCTTAACAGCAAACAAGAGGAAAGATGCAGGCGGGAATATAATTGGTTGTTTCTGCTTCTTGCAGATTGTATCACCAGATCTGCATCAGCCCTCAGAAGGACAAAAGCCACAGTGCAGGGCAAGCTTTTTTGAATTTAAGGAGTTGGCTTATATACTCCAAGAGATGAAGAATCCTTTAAATGGTATACGCTTCGCACACAAACTTTTGGAGAATACTGCTGTATCAGAAAATCAGAAACAATTTCTTGACACCAGTAATGCATGTGAAAGACAGATTATGACAATTATTGAGGATACAGATTTAGGAAGTATTGACAAAGGAACTGTGAAGCTAAACATGGAAGAATTTCTTCTGGAAAATATATTAGATGCCATAGTTAGTCAAGTCATGATCTTGGTAAGAAGAAAAAACTTGCAGCTGTTTCACAAAATTCCTGATGAAATCAAGGCACTTACTCTATGTGGCGATCAAATTAGGCTTCAGATGATCTTGTCTGACCTTTTGCTTAATGTGGTCAGCCATACACCATCTCCTAATGGCTGGGTAGAAATTAAGATTTCACCTGGTCTGAAGATAACACAGGATGGCAATGAGTTTATCCATCTGCAGTTCAGCATGACTCATGCTGGTCAAGGTCTTCCTTCTGCTGTTCTTCAGGATATGTTTGAAAGAGAGAATCAATGGACGACTCAGGAAGGTCTAGGGCTATATAGATGCCGGAAAATCCTCAGTAGGATGAATGGTCGTGTCCACTATGTAAGAGAACATGACAAGTGCTACTTCCTCATTGACTTTGAACTTAGAACGAAAGAAGAAAGGCAAAGGAATTTGCAAGCAGAGACAAGCATTTTAACTTAG 3222 0.4181 MKANTSTANRDKALAQYSADAGILAEFEHSAVSGKSFDYSRSLLYPPQSVSEEKMTAFLSKIRRGGLIQPFGCLLAIEEATFRIISYSENCFELLGLERQFYSQKFMGLIGVDATTLFTPSSCASFAKAVASKDISLLNPIWVYSRTTQKPFYAILHRIDVGIVIDIEPARSSDPALSLAGAVQSQKLAARAISRLQSLPGGDSGVLCDKVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLVKVIQSEELRQPLCLVNSTLRSPHGCHTQYMANMGSIAFLVMAVIVNGTDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLYSEMQLASQMAEKRILRTQTLLCDMLLRDSPFGIVTQSPNIMDLVKCDGAALYYGGNCWLLGTAPTEAQVKDIAEWLLSNHEDSTGLSTDSLADAGYPGAALLGNSVCGMATARINSRDFLFWFRSHAAEELKWGGAKHHSEDKDDGGKINPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRESFVDTENCGPNTLNNAQHTDTTMDGIDELSSVAFEMVRLIETATVPIFGVDSADLINGWNAKIAELTGLHTSEAIGKSLVNEVVHDDSCEAVENFLSRALQGQEDKNVELKLKHFGLHLQKSVVYIMANACTSRDHTNAVVGVCFVGQDITYEKVFQNKFIKLEGDYKAIVHSLSPLIPPIFASDENACCSEWNAAMEKITGRKRNDVIGKVLPGEIFGGLCQLKNQDTLTNFMILLYRGISGQDADKFSFGFLNRKGEFVDVFLTANKRKDAGGNIIGCFCFLQIVSPDLHQPSEGQKPQCRASFFEFKELAYILQEMKNPLNGIRFAHKLLENTAVSENQKQFLDTSNACERQIMTIIEDTDLGSIDKGTVKLNMEEFLLENILDAIVSQVMILVRRKNLQLFHKIPDEIKALTLCGDQIRLQMILSDLLLNVVSHTPSPNGWVEIKISPGLKITQDGNEFIHLQFSMTHAGQGLPSAVLQDMFERENQWTTQEGLGLYRCRKILSRMNGRVHYVREHDKCYFLIDFELRTKEERQRNLQAETSILT 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2156 1073 FunFam Phytochrome 703 811 - -
Glsi11g2156 1073 Pfam GAF domain 206 337 IPR003018 GO:0005515
Glsi11g2156 1073 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 943 1049 IPR003594 -
Glsi11g2156 1073 Pfam Phytochrome region 354 528 IPR013515 GO:0006355|GO:0009584
Glsi11g2156 1073 CDD HisKA 836 886 IPR003661 GO:0000155|GO:0007165
Glsi11g2156 1073 Gene3D PAS domain 703 814 - -
Glsi11g2156 1073 FunFam Phytochrome 184 351 - -
Glsi11g2156 1073 SUPERFAMILY PYP-like sensor domain (PAS domain) 704 806 IPR035965 -
Glsi11g2156 1073 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 203 331 IPR016132 -
Glsi11g2156 1073 ProSiteProfiles PAS repeat profile. 556 627 IPR000014 -
Glsi11g2156 1073 SMART gaf_1 203 351 IPR003018 GO:0005515
Glsi11g2156 1073 CDD PAS 701 809 IPR000014 -
Glsi11g2156 1073 FunFam Phytochrome 346 477 - -
Glsi11g2156 1073 Pfam His Kinase A (phospho-acceptor) domain 836 895 IPR003661 GO:0000155|GO:0007165
Glsi11g2156 1073 Gene3D - 182 345 IPR029016 -
Glsi11g2156 1073 SMART HisKA_10 832 895 IPR003661 GO:0000155|GO:0007165
Glsi11g2156 1073 NCBIfam PAS domain S-box protein 563 681 IPR000014 -
Glsi11g2156 1073 SUPERFAMILY GAF domain-like 349 527 - -
Glsi11g2156 1073 SUPERFAMILY PYP-like sensor domain (PAS domain) 562 670 IPR035965 -
Glsi11g2156 1073 Gene3D PAS domain 559 691 - -
Glsi11g2156 1073 SMART pas_2 558 625 IPR000014 -
Glsi11g2156 1073 SMART pas_2 689 759 IPR000014 -
Glsi11g2156 1073 CDD PAS 567 674 IPR000014 -
Glsi11g2156 1073 CDD HATPase_Phy-like 943 1055 IPR044767 -
Glsi11g2156 1073 ProSiteProfiles Histidine kinase domain profile. 838 1057 IPR005467 -
Glsi11g2156 1073 Pfam PAS fold 559 674 IPR013767 GO:0006355
Glsi11g2156 1073 Pfam PAS fold 690 809 IPR013767 GO:0006355
Glsi11g2156 1073 FunFam Phytochrome 552 684 - -
Glsi11g2156 1073 Gene3D - 873 1049 IPR036890 -
Glsi11g2156 1073 Gene3D - 346 530 IPR043150 -
Glsi11g2156 1073 PANTHER OS08G0260000 PROTEIN 54 892 - -
Glsi11g2156 1073 PRINTS Phytochrome signature 489 507 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 PRINTS Phytochrome signature 652 669 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 PRINTS Phytochrome signature 578 593 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 PRINTS Phytochrome signature 672 692 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 PRINTS Phytochrome signature 118 140 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 PRINTS Phytochrome signature 456 475 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 PRINTS Phytochrome signature 559 575 IPR001294 GO:0006355|GO:0009584
Glsi11g2156 1073 Gene3D PAS domain 59 170 - -
Glsi11g2156 1073 ProSiteProfiles PAS repeat profile. 690 735 IPR000014 -
Glsi11g2156 1073 SUPERFAMILY GAF domain-like 183 338 - -
Glsi11g2156 1073 SUPERFAMILY PYP-like sensor domain (PAS domain) 62 172 IPR035965 -
Glsi11g2156 1073 Pfam PAS fold 59 170 IPR013654 GO:0006355
Glsi11g2156 1073 SMART HKATPase_4 943 1057 IPR003594 -
Glsi11g2156 1073 ProSitePatterns Phytochrome chromophore attachment site signature. 271 280 IPR013516 -
Glsi11g2156 1073 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 897 1055 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2156 Glsi-ChrGlsi11 15150596 15155388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2156 15 1057 Histidine Kinase Gene Family AT4G18130 60.313 0.0 1359