Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2155 ATGCATTTCACCATAGTAGCTCAACTGGCACCGTCAGTGCTTCAACTGCTGAGTTTGGGTGGAGACCAGGAGGCAGTTGCCGGGTTAAATGAAAAAGAAAATGACTCAAATATATCTTCTATTTTGTGCATGAAACAGAAGGGTGATGCAATGAAGCAACCTTTTGATGTTTCATCTTCGGGTCCTACCAAGATTCCATCAATAAAGATACCTAAAGAAGTGGGGCGCAGTGCTTGGGAGGTTTTATCTGGATCTGATGCCTATCATGCCTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAACTTGAATGACACTGAAAATGATTATCAATCTGTGGATGACATCTCATCTGGCTTTAAAAAGCTCCATCAAGATGCAGAGGTTAACAATTCACTTGAAGATGCTGATACTCATGCAATTGGAACCATGCTCCCTGATGACGAGGAGGAGCTTTTAGCTGGCATAATGGAGGATTTTGACCTAAGTGGGCTGCCTGGTTCCCTGGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGGGGAGGTATGGAACTGGAAACTGATGTACAGGACAGTCTCAGTGTGGGTATGTCAAAAATAGGTTTCTCTGACAGTACTGTTGGCAATGGTTTGCCCCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGTGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAACGTGGAGGATACAGAGTTGAAAGCTCTTTTTGAGCAATATGGTGATATTAGGACTCTCTATACTGCATGTAAACATCGGGGTTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCCTTACAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAATCAAGGAACTTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGTCAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACACCTCACAAGAGGCATCATAAATTTATTGAATTTTATGACGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTGGAACCTAGTCGCCCTGGAGGCGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGAGCTTGATCAAGATGAATCTCGGAGTTTCCGACATCAAGTGGGTTCACCATTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAGCAGCCCTGTCGAACATAAGCCAATGCAAACTATCAGTAATTCTCCCGGTTCTAGGATTATGAGCCCAACAGGCAACCATTTACCAGGATTAGCTTCAATTTTACAACCTCAGGTATCAAGTACTATGAAGGATGCAGCTGTTGCCAAGGACATAGGAAGTAGTCATGGAGAGCACATATTTAATAGTACCAGCTCCTCACATGGAGCTACATTTCAGTCGCATTCACTTCCAGAGCCTAAGTTCAGCCAATATCATGGAGGTTTGTCCTCTTTTGGTCTGTCAACTTCAAACGGATCCTCAGTCGAAACCTTGTCTGGGCCACAGTTTCTCTGGGGAAGTTCAAGCCTATACTCCGAGCACACCAAACCTTCACCTTGGCCAAGATCATCTGGGGGGCTTCCATTTACATCAAATGGAAAGGGCCATGCTTTCCCATACTCAGGTCAGAATAGTTCCTTTGTTGGTTCGTCCCATCATCATCTCCATCATCATGTTGGCTCTGCTCCATCAGGTGTTTCCTTTGAGAGGCGCTTTGGTTTCCTTCCTGAGTCGCCTGAAACCTCATTCATGAATCATGTTAGTTATGGAGGTATAAACTTGGGGCACAATGAAGGAAATTACATGGTTAACATGGGCGGGTCTGTTAATGCTGGCATTACTATACCAAGAAATATGCCTGAAAATGTTCAGTCAAATTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTTTGGGTAATGGTCCTTACCCGGGCCTGCCACTTACTACAATGGACAGTTTGACTGACCGTGGGCGGAGTAGACGGGTAGAGAACAATGGTAACCAAGTTGATAGTAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATACAAGGACTACTTTAATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTACTAGCTGCCATTGACGAAAATCATAGGGGTACCTATGATTTTCTCTATCTGCCTATTGATTTTAAGAACAAATGCAATGTGGGCTATGCATTTATCAACATGCTCTCACCATCACTTATTATACCATTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGGATCCAAGGAAAGGCTGCCCTTGTGAGCCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGTTGCCGCCCTATTCTCTTCCACTCGGAGGGTCCTGAAGGTGGTGATCAGATCATACAAGAACATCTTCCCTCCAACAATCTCAATATCCAGATCGTACAAGAACATTCAATTGATTCTTCTGGAAGCCCTCCAAAGAGTAGCCCTCCTGTGAACTTGGAGACAAGTTAA 2715 0.4276 MHFTIVAQLAPSVLQLLSLGGDQEAVAGLNEKENDSNISSILCMKQKGDAMKQPFDVSSSGPTKIPSIKIPKEVGRSAWEVLSGSDAYHASSDASLFSSSLPVLPHEKLNLNDTENDYQSVDDISSGFKKLHQDAEVNNSLEDADTHAIGTMLPDDEEELLAGIMEDFDLSGLPGSLEDLEEYDLFGSGGGMELETDVQDSLSVGMSKIGFSDSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDTELKALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRHQVGSPLANSPPGNWLQFSSPVEHKPMQTISNSPGSRIMSPTGNHLPGLASILQPQVSSTMKDAAVAKDIGSSHGEHIFNSTSSSHGATFQSHSLPEPKFSQYHGGLSSFGLSTSNGSSVETLSGPQFLWGSSSLYSEHTKPSPWPRSSGGLPFTSNGKGHAFPYSGQNSSFVGSSHHHLHHHVGSAPSGVSFERRFGFLPESPETSFMNHVSYGGINLGHNEGNYMVNMGGSVNAGITIPRNMPENVQSNFRMRSSPRLSPVFLGNGPYPGLPLTTMDSLTDRGRSRRVENNGNQVDSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEGGDQIIQEHLPSNNLNIQIVQEHSIDSSGSPPKSSPPVNLETS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2155 904 Gene3D - 328 427 IPR012677 -
Glsi11g2155 904 MobiDBLite consensus disorder prediction 884 904 - -
Glsi11g2155 904 FunFam Protein MEI2-like 1 328 423 - -
Glsi11g2155 904 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 310 IPR000504 GO:0003723
Glsi11g2155 904 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 396 IPR000504 GO:0003723
Glsi11g2155 904 FunFam MEI2-like protein 5 isoform 2 233 327 - -
Glsi11g2155 904 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 402 IPR000504 GO:0003723
Glsi11g2155 904 Gene3D - 233 327 IPR012677 -
Glsi11g2155 904 SMART rrm1_1 745 821 IPR000504 GO:0003723
Glsi11g2155 904 SMART rrm1_1 330 398 IPR000504 GO:0003723
Glsi11g2155 904 SMART rrm1_1 245 313 IPR000504 GO:0003723
Glsi11g2155 904 CDD RRM1_MEI2_like 243 319 IPR034453 -
Glsi11g2155 904 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 317 IPR000504 GO:0003723
Glsi11g2155 904 SUPERFAMILY RNA-binding domain, RBD 241 404 IPR035979 GO:0003676
Glsi11g2155 904 SUPERFAMILY RNA-binding domain, RBD 745 830 IPR035979 GO:0003676
Glsi11g2155 904 MobiDBLite consensus disorder prediction 502 523 - -
Glsi11g2155 904 CDD RRM3_MEI2_like 746 831 IPR034454 -
Glsi11g2155 904 CDD RRM2_MEI2_like 328 398 - -
Glsi11g2155 904 PANTHER RNA RECOGNITION MOTIF-CONTAINING 92 861 - -
Glsi11g2155 904 Pfam RNA recognition motif 2 743 839 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2155 Glsi-ChrGlsi11 15142945 15149484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2155 239 437 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 8.84e-07 50.8