Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2129 ATGAATGTAATACATCACGAATGTACTGTGAAATTATATGATGGGTTTCTCCTCCCTGCTTTGTTAAATTAAATGATTGATAGCCAAGACTATGGAGATCATTATCATGCATTGGGTGCGTCCCCGTTCCCTCCATCCTCTAATGTTTCTTTCATGATTATAGTTTCTGAGCTTGTTACTCAGAGAGAGGGAAAAAGGCTAGCGATGGGGTTGAGAAACCTTGGAGAATTTGGAGTCTTTTTCAAAGAAGGATGGGACAAAGCATTATCAGTTGCAAAGTTCCTCTGTTTTCTTCACGTCACCAACACCTATCTCGTGGGTTCTGCTCTGAGCTACGGTCCTAGCATGCTTCCGACACTCGGTTTGACGGCTAACATTGTATTGACCGAACAGATCTCCACCCGATTTGGTAAAGTTGGGCGCGGGGATATTGTCATTGTGCGGTCACCTCAGAACCCTCAGAAGTTCATTACCAAGCGCTTGATTGGATTGGAGGGTGATAGTATTACATATGTTGTCGATCCTAAGAACAGTGATAAATGCGAGACTGTTGTGGTTCCTAAGGGACACATTTGGGTACAGGGGGATAACATATACGAATCTACTGATTCAAGACGTTTTGGTCCTGTTCCTTCTGGCCTTCTTCATGGCAAGGTTTTCTGGAGGATATGGCCACCGAAAGCTTTTGGACCATTGTGCAAAAAATGA 708 0.4364 MNVIHHECTVKLYDGFLLPALLNXMIDSQDYGDHYHALGASPFPPSSNVSFMIIVSELVTQREGKRLAMGLRNLGEFGVFFKEGWDKALSVAKFLCFLHVTNTYLVGSALSYGPSMLPTLGLTANIVLTEQISTRFGKVGRGDIVIVRSPQNPQKFITKRLIGLEGDSITYVVDPKNSDKCETVVVPKGHIWVQGDNIYESTDSRRFGPVPSGLLHGKVFWRIWPPKAFGPLCKK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2129 235 SUPERFAMILY LexA/Signal peptidase 112 232 IPR036286 -
Glsi11g2129 235 Pfam Signal peptidase, peptidase S26 91 171 IPR019533 GO:0004252|GO:0006465
Glsi11g2129 235 Pfam Signal peptidase, peptidase S26 180 224 IPR019533 GO:0004252|GO:0006465
Glsi11g2129 235 Gene3D Umud Fragment, subunit A 101 230 - -
Glsi11g2129 235 PRINTS Bacterial leader peptidase 1 (S26A) family signature 157 169 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi11g2129 235 PRINTS Bacterial leader peptidase 1 (S26A) family signature 186 205 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi11g2129 235 PRINTS Bacterial leader peptidase 1 (S26A) family signature 104 120 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi11g2129 235 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 80 232 - -
Glsi11g2129 235 FunFam Inner membrane protease subunit 1 102 231 - -
Glsi11g2129 235 CDD S26_SPase_I 113 219 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2129 Glsi-ChrGlsi11 14994444 14997197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2129 116 232 MADS-box Gene Family AT1G29960 55.556 4.63e-45 145