Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2126 ATGGGTCGTCGGAAGATCGAGATGAAGATGGTGAAGGACCCGAGCTCCAGGCAGGTGACATTCTCGAAGCGCCGAACTGGTCTCTTCAAGAAGGCAAATGAGTTGGGAATCTTGTGTGGGGTTGAACTCGCCATTTTGGTGTTCTCCCCAGGCGGCAGGCTCTTCTCCTTCGGCCACCCAAGCGTTGACGCTGTGGCTCATAGGTTTCTACACCACCATGAAGCTCAACCAGATGGTGGGTCTTCTTCTGATGATGCTGGAGGCAACGTGGAGAAACTTAGTCAGCAGCTAAAGAATGTGATGAAGCAGATGGAGGTGGAGAAGAATAAGGGGGAGATGCTTGACAAGGCCCTCCATGAGAAGAAGATGTTGGGCATTGGTGATGGGCTTGATTTGGAGAAGCTTCAGAAGTTGAAGCGCTCATTGGAACAGCTCAGGGATGGTGTGAAACTGCGTGTGAGAGAAATGGAGGCGTCCTCGTCCTTGCTGCTACTGGCAGAACAACCTGTGTAG 513 0.5205 MGRRKIEMKMVKDPSSRQVTFSKRRTGLFKKANELGILCGVELAILVFSPGGRLFSFGHPSVDAVAHRFLHHHEAQPDGGSSSDDAGGNVEKLSQQLKNVMKQMEVEKNKGEMLDKALHEKKMLGIGDGLDLEKLQKLKRSLEQLRDGVKLRVREMEASSSLLLLAEQPV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2126 170 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Glsi11g2126 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi11g2126 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi11g2126 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi11g2126 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi11g2126 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi11g2126 170 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Glsi11g2126 170 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Glsi11g2126 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2126 170 Coils Coil 90 110 - -
Glsi11g2126 170 Coils Coil 132 152 - -
Glsi11g2126 170 PANTHER MADS BOX PROTEIN 3 149 - -
Glsi11g2126 170 MobiDBLite consensus disorder prediction 74 93 - -
Glsi11g2126 170 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2126 Glsi-ChrGlsi11 14990562 14991074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2126 1 166 Type I MADS-box Gene Family AT2G34440 43.678 1.43e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi11g2126 SRF-TF 1.1e-23 No_clan