Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2106 ATGGGAAGAGGAAAAGTGGAACTGAAGAGGATAGAGAACAAGATAAACAGACAGGTCACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGTAGCCCTAGGTATGGACTATATATATGTAGCATGCGCACTCCCAAATTTACTTCAATTTCTTTTCATCTCTCTTTTCTTACTGTCACACTCTCTCTTTATGATTCAGAAGATCAGAATAGCTACCGTGAGTACCTGAAGCTGAGAACCAGATTTGAATCTCTTCAAAAGACTCAGAGGAACCTTTTGGGAGAGGACTTGGGTGTATTGAATACTAAAGAACTTGAGCAGCTTGAGCTGCAACTGGATTCATCTCTCAAACTTGTGAGGTCCACAAAGACCCAATTCATGCTGGACCAGCTATCCGATCTTCACAATAAGGAGCAGATGTTGGCAGAAGCAAACAGAGCTTTGAGTCTGAAGCTGGAAGAAATCAATGCAAGAAACCAGTTTGGGCAATCATGGGAAGCTGGGGAGCCCAGCATGGGATATGGTGCCCAGAACATTGCTCACTCTCAGGGCTTCGTCCAGACTTTGGATTGCAATCCCACATTGCAGATAGGTATTGAATACAGGTACAGTCCTGTTGGTCCAGATCAGATAACCGCTACAACTCAAGCTCAGCAATGCGTTGAGTTGCTTTCCTACTTCACGCGTAGGTCCTTGGAGACGACGATGAAGATGAATGGTCACCATATTCTTTATCCTTACAATGCCTTCAAAAGAGCGCAACAAGCTCTGCAACTTTCTCTGCTCTTTGAAGATGAAGTTTAA 888 0.4426 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPRYGLYICSMRTPKFTSISFHLSFLTVTLSLYDSEDQNSYREYLKLRTRFESLQKTQRNLLGEDLGVLNTKELEQLELQLDSSLKLVRSTKTQFMLDQLSDLHNKEQMLAEANRALSLKLEEINARNQFGQSWEAGEPSMGYGAQNIAHSQGFVQTLDCNPTLQIGIEYRYSPVGPDQITATTQAQQCVELLSYFTRRSLETTMKMNGHHILYPYNAFKRAQQALQLSLLFEDEV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2106 295 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
Glsi11g2106 295 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 Coils Coil 133 153 - -
Glsi11g2106 295 ProSiteProfiles K-box domain profile. 96 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2106 295 Coils Coil 162 182 - -
Glsi11g2106 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 Pfam K-box region 94 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2106 295 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Glsi11g2106 295 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Glsi11g2106 295 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi11g2106 295 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2106 Glsi-ChrGlsi11 14891748 14898372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2106 1 239 MADS-box Gene Family AT5G15800 61.753 1.29e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g2106 K-box 3.4e-25 No_clan