Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2103 ATGGGTTCTGTTTGTTGTTGTTTGAGTGTTGACGATTTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGGAACTGCGTGTGTCTCAGTTGCTTTATACAGAACTTTATGAATGTGTATACATCAATATTCCGTAGAGGGGAAGTGCATTCAATTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCCACAGCATCACTTGATAATTCTCTATCTGACATGTACCATTCTCCTCCAAGGCCCTTACCTTACGATGCAGACCCCCGGCATTTCCGCTCACAGCGTGATGGATTAGTTTCAAGACATGAGAAGGGTTCGAGTCATTTGAATGAGGAGTCAGAACCTCTGAGAAGTGATGTAGATGTGGATCATGAATATTTAAATTCAGGAGGCAAATGGACTGAATGTGCCTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTCTCATCAGCAAAATATACAACTGGAGTTGGGCTCTTTTATGCATCATCAGAAGAGGAGGATGTTTGTCCAACTTGTCTTGAAGAATACACTCAAGAGAACCCAAAGATAATGACAAGGTGCTCCCATCATTTTCATCTTAGTTGCATTTATGAATGGATGGAGAGAAGTGAAAACTGTCCAGTTTGTGGGCAGGTGATGGTATTCAATGAAACAACTTAA 684 0.405 MGSVCCCLSVDDFEDYVNPNSSVYRNCVCLSCFIQNFMNVYTSIFRRGEVHSIPSSIQGAASMTSTASLDNSLSDMYHSPPRPLPYDADPRHFRSQRDGLVSRHEKGSSHLNEESEPLRSDVDVDHEYLNSGGKWTECACEDGSKEYRSKSSLRLSSAKYTTGVGLFYASSEEEDVCPTCLEEYTQENPKIMTRCSHHFHLSCIYEWMERSENCPVCGQVMVFNETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2103 227 CDD RING-H2_AIRP1-like 173 221 - -
Glsi11g2103 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 58 225 - -
Glsi11g2103 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Glsi11g2103 227 SMART ring_2 177 217 IPR001841 -
Glsi11g2103 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Glsi11g2103 227 SUPERFAMILY RING/U-box 172 223 - -
Glsi11g2103 227 MobiDBLite consensus disorder prediction 98 119 - -
Glsi11g2103 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 224 IPR013083 -
Glsi11g2103 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Glsi11g2103 227 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2103 Glsi-ChrGlsi11 14869383 14872514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2103 1 225 C3H Transcription Factor Family AT5G38895 58.850 1.17e-98 288