Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2086 ATGGCTCACTTCTCTACCTCTCCACTACCATACTCTTTTTCCCTCGAAGATGAATTGGATGAATTTGAAGAATCGGACTCCGATCAAGAGGTCCCCGATATCCCATCACTGTCGGCCCTCGATCATTGGTCCTCCGACTCCTCCAACCCCTTTGCAACCGTGTCCTTCGACCATAGGAGCAATCGTTTGAATTGGTACTCAGATTCCGAATCCGATTCCGCGAGTTGCTTTGTCACAAATCTTTTCGAAAATCGCTCCTCTGAGCACTCTCGCCGTTTCTTCGATGATAGTTCTGATATTAATCCGTTTTCGGGTGTTCTTTGCGATGATCGTGGGGGAGAGGGATCGAGTTATGCGGAGATAGAATTAGGTTCTGGATTTGGAACGGAAAAAAATGATGGGATTTCTGCAGTAGGTGAAAATTCGGGTTCTGAAAGGGTTCGCACGCACACGAATGGTCTTCGAATTGTCGGCTTCAGTTCTGATTCCGATTCAAATAGTGATCATGAGCTTGATAGAGCTATGGAATTCGGTTCTGGTGAAAATGATGGCAACAGAATTAGTGCGTTTGACGATTTAGATGTTCGTTTATGTTGGGATAGCCTTTGTTTGGAGGATCGGAGGACCCTTAATGAACATTTTGAATGGGAGGAGTTAGGGGAAAGAGTCAATGATGGAGAAGACTTGAGCGTGGTGATTGGTGAGGTCGATGATCAATCGGTAGCATCTGGGCTTTCCTATGGGGAAGAGCCGGGTGAAGAGGCATTGAGATACCTTGAATGGGAAATTCTTTTAGCTGTCAACAATTTGGAGAGGAATTCAAGCTTGGAACATGAAACCACTGCTGATTCCTATTTAACTGTTCAGGATGGTTATATCTACACAGCTGAATATGATATTCTTTTTGGGCAATTCCTGGAAAATGAAAGTTCATTAAAAGGTAGTCCACCCACGGCTAAAAGTGTTATGGAGAATCTTCCTCTAGTAGAATTAACAAAGGAGGACTTGCAGGGAGAGAGTGTAGCATGTGCCATTTGCAAAGATGAGATCCTGTGGAAGGAGAAGGTGAGGAGGCTTCCCTGCTTACACTTTTACCATGGGGACTGCATTATGCCATGGTTGAGCATTCGTAATACATGCCCTGTTTGTCGGTTTGAGTTGCTCACAGATGATCCTGACTATGAGCAGAGGAAGAGTCAGAGAACTGCTCATGGTCTGTTGGAGTTTGCAGAGCAGCTGCAATTGTGA 1248 0.4495 MAHFSTSPLPYSFSLEDELDEFEESDSDQEVPDIPSLSALDHWSSDSSNPFATVSFDHRSNRLNWYSDSESDSASCFVTNLFENRSSEHSRRFFDDSSDINPFSGVLCDDRGGEGSSYAEIELGSGFGTEKNDGISAVGENSGSERVRTHTNGLRIVGFSSDSDSNSDHELDRAMEFGSGENDGNRISAFDDLDVRLCWDSLCLEDRRTLNEHFEWEELGERVNDGEDLSVVIGEVDDQSVASGLSYGEEPGEEALRYLEWEILLAVNNLERNSSLEHETTADSYLTVQDGYIYTAEYDILFGQFLENESSLKGSPPTAKSVMENLPLVELTKEDLQGESVACAICKDEILWKEKVRRLPCLHFYHGDCIMPWLSIRNTCPVCRFELLTDDPDYEQRKSQRTAHGLLEFAEQLQL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2086 415 SMART ring_2 343 383 IPR001841 -
Glsi11g2086 415 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Glsi11g2086 415 FunFam E3 ubiquitin-protein ligase RING1-like 304 390 - -
Glsi11g2086 415 MobiDBLite consensus disorder prediction 18 45 - -
Glsi11g2086 415 Pfam Ring finger domain 343 384 IPR001841 -
Glsi11g2086 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 389 IPR013083 -
Glsi11g2086 415 SUPERFAMILY RING/U-box 323 390 - -
Glsi11g2086 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 211 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2086 Glsi-ChrGlsi11 14773049 14774296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2086 261 398 C3H Transcription Factor Family AT5G15820 52.174 7.95e-45 157