LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2084	ATGCAGGCCAGGGAGGTTGCAGGAATCAATTTTCAATTCCATTCAAACCCACCTCCAAACCCTTCTCACTACAGTGCTATTCAGAACACCATATCCGCATTCCAACTTCAAAGAGTCTCTAATCAGCTATATGGTTTCCAAAACCCTCTTCAAGTTCAGGACTTTAGCTCTCCATCATCATGTATCAGTAGCAATTCGACTTCTGATGAAGCAGATGAGCAAAACCAGAACCTCATCAATGAGAGGAAACACAGAAGGATGATATCAAACAGAGAGTCTGCACGTCGATCACGTATAAGGAAGCAGAAGCACCTTGATGAGCTCTGGTCACAGGTTGTTTGGCTTAGGAATGAGAATCACCAGCTGATAGATAAGCTGAATCATGTGTCGGAGAACCATGACCGACTCCTGCAAGAGAATGCTCAGCTGAAAGAGGAAGCTTCAGAGCTTCGTCAAATGCTAAAGGACATGCGGCTAAACAGTCCCTGCCCTTCCTTCAGCCCCCTGGAAGATGTCCTCTGCACCTCAGCCTATCTCAGATCTGATTCCCCCAACCAATCCATCTCAACTTCTATTGACCTGCTTGGCTGA	591	0.4619	MQAREVAGINFQFHSNPPPNPSHYSAIQNTISAFQLQRVSNQLYGFQNPLQVQDFSSPSSCISSNSTSDEADEQNQNLINERKHRRMISNRESARRSRIRKQKHLDELWSQVVWLRNENHQLIDKLNHVSENHDRLLQENAQLKEEASELRQMLKDMRLNSPCPSFSPLEDVLCTSAYLRSDSPNQSISTSIDLLG	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2084	196	SUPERFAMILY	Leucine zipper domain	82	133	IPR046347	GO:0003700\|GO:0006355
	Glsi11g2084	196	Coils	Coil	119	160	-	-
	Glsi11g2084	196	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	80	143	IPR004827	GO:0003700\|GO:0006355
	Glsi11g2084	196	MobiDBLite	consensus disorder prediction	1	22	-	-
	Glsi11g2084	196	CDD	bZIP_plant_GBF1	83	134	IPR045314	GO:0003700\|GO:0006355
	Glsi11g2084	196	PANTHER	BASIC LEUCINE ZIPPER 43-RELATED	16	166	IPR044521	-
	Glsi11g2084	196	MobiDBLite	consensus disorder prediction	55	76	-	-
	Glsi11g2084	196	MobiDBLite	consensus disorder prediction	55	74	-	-
	Glsi11g2084	196	Pfam	bZIP transcription factor	82	140	IPR004827	GO:0003700\|GO:0006355
	Glsi11g2084	196	SMART	brlzneu	78	142	IPR004827	GO:0003700\|GO:0006355
	Glsi11g2084	196	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	85	100	IPR004827	GO:0003700\|GO:0006355
	Glsi11g2084	196	FunFam	BZIP transcription factor	80	131	-	-
	Glsi11g2084	196	Gene3D	-	80	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2084	Glsi-ChrGlsi11	14760496	14761086	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2084	43	166	bZIP Transcription Factor Family	AT3G30530	66.667	2.11e-51	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi11g2084		bZIP_1	2.6e-14	CL0018