Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2078 ATGACTACTGACCAAGAAAAGAAGGATCAGCTGGTACCCAAGACAAGAAGGAGAAAGGTGAAGGAGAAACAAGGAAAGAAAAGAAAGAGAGATAGAGATTGTATAGAAATAGAAAGAAAAAAAAAACAGAAGAAAAAGGGAAAATTTGGACAAGATAGGTTGGGAATAATTAGGATGGGGAGAGGAAAAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGTAGCCCTAGGTATGAACTATATGTAGCATTGATAACGGATTCAGAAGATCAGAATAGCTACCGTCAGTACTTGAAGCTGAGAACCAGATTTGAATCTCTTCAAAAGACACAGAGAAACCTTTTGGGAGAGGACTTGGGCGTATTGAATACTAAAGAACTAGAGCAGCTTGAGCTGCAGCTGGATTCATCTCTAAAACTTACCCAATTCATGCTGGACCAGCTAGCCGATCTTCCCAGTAAGGAGCAGATGTTGGCAGAAGCAAACAAAGCTTTGAGTATGAAGCTGGAAGAAATCAATACAGGAAACCAGTTTGGGCAATCATGGGAAGCTGGTGAGCCCAGCATGGCATATGGTGCACAGAATATTGCTCACTCTCAGGGCTTTGTCCAGCCTCTGGATTGCAATTTCACATTGCAGATAGGGTACAGTCCTGTAGATCCAGATCAGATAAACGCTACAACTCAAGCTCAGCAAGTGAATGCCTTTATTCCAGGATGGATGCTTTGA 858 0.4301 MTTDQEKKDQLVPKTRRRKVKEKQGKKRKRDRDCIEIERKKKQKKKGKFGQDRLGIIRMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPRYELYVALITDSEDQNSYRQYLKLRTRFESLQKTQRNLLGEDLGVLNTKELEQLELQLDSSLKLTQFMLDQLADLPSKEQMLAEANKALSMKLEEINTGNQFGQSWEAGEPSMAYGAQNIAHSQGFVQPLDCNFTLQIGYSPVDPDQINATTQAQQVNAFIPGWML 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2078 285 SUPERFAMILY SRF-like 60 124 IPR036879 GO:0003677|GO:0046983
Glsi11g2078 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 68 115 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 SMART madsneu2 59 118 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 Pfam K-box region 131 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2078 285 CDD MADS_MEF2_like 60 118 IPR033896 GO:0000977|GO:0045944
Glsi11g2078 285 ProSitePatterns MADS-box domain signature. 61 115 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 ProSiteProfiles MADS-box domain profile. 59 119 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 PRINTS MADS domain signature 81 96 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 PRINTS MADS domain signature 61 81 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 PRINTS MADS domain signature 96 117 IPR002100 GO:0003677|GO:0046983
Glsi11g2078 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 61 206 - -
Glsi11g2078 285 ProSiteProfiles K-box domain profile. 133 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2078 285 MobiDBLite consensus disorder prediction 1 16 - -
Glsi11g2078 285 MobiDBLite consensus disorder prediction 1 50 - -
Glsi11g2078 285 Gene3D - 71 145 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2078 Glsi-ChrGlsi11 14678733 14683352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2078 59 285 MADS-box Gene Family AT5G15800 58.779 6.04e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g2078 K-box 1.9e-16 No_clan