Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2077 ATGAGGAGAGGTAGGACTGAGCTGAAGCGGATCGAGAAGGAGGCGAACCGGCAAGTGACCTTTTCAAAGCGCCGATCAGGGCTGCTCAAAAAAGCAAATGAGCTCTCTGTTCTGTGTGATGCTCAGGTAGCTTTGATTGTGTTCTCTGCCAAAGGCAAACTCTATGAGTTTTCGTCTAATTCCACCAGCATGGATGACATACTGGAACGATATGAAAGACATTCTCGTACCGCGATGATAGCTGAATCTAACAATGAATTTCAGGGAGACTTGTCGTTGGAGCTATTCCGCCTCACTTCCCAGGTTGAGGTCTTGGAGAAGAACATAAGGAACTATGAAGGACGAGATCTAGATTCCTTGAGTTTGAGAGAGCTTCAAAGTTTGGAGTGCCAGCTCGATGCAGCTCTGAAGCGCATTCGAGCTAAAAGGAATCAACTCATGAATGAGTCCATCTTAGAGATGCAGAGAAAGGCAAAGATGTTGGAAGTTGAAAACACCATATTGGAAAAGAAGGTGAAGGAAGAAGAGAAGGAGAAAGGCAAACAAAAGTTGGGGACGGAAGGGTGCAGACGAAAAAACTTTGATCGAAGTCTATTCAACTTCGACTTTTGTCCACTTGAGCTTTCATCACTTCCACAACCACCAGTTTCAGCATTGACTTTAGGTGGACCTTCTCAGGCCGGAGAAGCCGTGGCGCAGGCTGAAGTTGGAAATGCTCCTAGAAGCAGCATTGTCATGCCACCTTGGATGCAGCATCAGTTCACTAGATAG 771 0.4617 MRRGRTELKRIEKEANRQVTFSKRRSGLLKKANELSVLCDAQVALIVFSAKGKLYEFSSNSTSMDDILERYERHSRTAMIAESNNEFQGDLSLELFRLTSQVEVLEKNIRNYEGRDLDSLSLRELQSLECQLDAALKRIRAKRNQLMNESILEMQRKAKMLEVENTILEKKVKEEEKEKGKQKLGTEGCRRKNFDRSLFNFDFCPLELSSLPQPPVSALTLGGPSQAGEAVAQAEVGNAPRSSIVMPPWMQHQFTR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2077 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2077 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Glsi11g2077 256 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Glsi11g2077 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2077 256 Coils Coil 95 115 - -
Glsi11g2077 256 Coils Coil 125 178 - -
Glsi11g2077 256 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Glsi11g2077 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2077 256 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Glsi11g2077 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2077 Glsi-ChrGlsi11 14624300 14634894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2077 1 176 MADS-box Gene Family AT1G26310 56.425 5.13e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g2077 K-box 1.6e-20 No_clan