Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2050 ATGGCCGACGAACCAATGCCCACTCGTTGGTCCTTCCAGGACTTTGAATTGTTTTATGACGCCAAGTTTGGTAGCAAGAGAATCTTGGAGAATGGCGACACTGCTGACAAATCGGTCAGCAATGGAATTTCTTCGGGCATTGCAAGCAATGGCAATCTGCATGCCAAAAAAACATCGGATATGGCTATCTATGAGCAGTTTCAAAGTCAGGGGCAGAATTTAACCCACTCAAATGGTTTCTCACCAAACCATATGAATGAAAGGCCGCAGAAGACTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCCTTCGTGAGAGTCCTGACGTGAAGTGGGAAAACATCAAGGGGTTAGAAACTGCCAAACGTTTACTGAAAGAGGCTGTTGTTATGCCAATCAAGTATCCCAGGTACTTTACTGGTCTATTATCACCATGGAAGGGTATTCTCCTTTTTGGGCCCCCAGGCACAGGAAAGACAATGCTTGCGAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAATATTTCGGCATCATCTGTTGTCAGCAAATGGCGAGGCGATTCAGAAAAGTTAGTGAAGGTATTATTTGAACTTGCTAGGCACCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGGGAAGCACGCAGTGAGCATGAAGCAAGTAGACGATTAAAAACTGAGCTACTCATACAGTTGGACGGCTTGACACGGACTGATGAACTTGTTTTTGTTCTGGCGGCAACAAATCTTCCCTGGGAACTGGATGCAGCCATGCTGCGACGCCTTGAGAAGCGAATCCTTGTGCCACTTCCAGAACCAGAAGCAAGAAAAGCAATGTTTGAGGAGCTCCTTCCATCACAGCCTGATAAGGAGCAGATCCCCTATAATTTACTGGTGGAGCATACAGAAGGATATTCAGGCTCAGATATCCGGTTACTGTGTAAAGAGGCAGCAATGCAGCCCTTGAGACGCTTAATGTCACAACTTGAACAGAGACAAGAGGTGCTGCCCGAAGAAGAGTTGCCTATGGTTGGCCCTATCAGACCTGAAGATATAGAGACTGCTTTAAAGAACACAAGACCATCTGCTCATCTCCATGCTCACAAATATGAAAAGTTTAATGCTGATTATGGAAGTCTTATACTTCAATGA 1212 0.4455 MADEPMPTRWSFQDFELFYDAKFGSKRILENGDTADKSVSNGISSGIASNGNLHAKKTSDMAIYEQFQSQGQNLTHSNGFSPNHMNERPQKTLLPPFESAEMRTLAESLSRDILRESPDVKWENIKGLETAKRLLKEAVVMPIKYPRYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQLDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARKAMFEELLPSQPDKEQIPYNLLVEHTEGYSGSDIRLLCKEAAMQPLRRLMSQLEQRQEVLPEEELPMVGPIRPEDIETALKNTRPSAHLHAHKYEKFNADYGSLILQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2050 403 PANTHER AAA DOMAIN-CONTAINING 70 399 - -
Glsi11g2050 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 386 IPR027417 -
Glsi11g2050 403 Pfam AAA+ lid domain 317 352 IPR041569 -
Glsi11g2050 403 SMART AAA_5 155 292 IPR003593 GO:0016887
Glsi11g2050 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Glsi11g2050 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 118 302 - -
Glsi11g2050 403 CDD RecA-like_VPS4-like 125 288 - -
Glsi11g2050 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 291 379 - -
Glsi11g2050 403 Gene3D - 118 394 IPR027417 -
Glsi11g2050 403 Gene3D - 291 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2050 Glsi-ChrGlsi11 12973170 12980667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2050 153 363 Calmodulin-binding Proteins AT3G56690 36.449 1.84e-32 128