LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2045	ATGGGTTCGGGAGCCATTGCAGAGAAAGGGTGGAGGAAAGGCCCTTGGACTCTTGAAGAGGATAGGTTGCTTATTGATTATGTCAGCTTGCAGGGGGAAGGGGGATGGAGTTCTGTGGCCAAGTTTGCAGGATTGCTTCGCAGAAGAGGTGAAAAAGGGAAGAATAGTGAGGTTTTGATTTCCACTTATGTGTGTTTGGTAGTGAATGTGGAAAATGAGATGATCATTAAAATCTATAATTCACTTATCAAGCATAGCCTAAAAGAAGAAGGAATTAAATATATAAAATTATTGTTTCTTAATTATGGGCGTGGTCGATATGTTTCTGCCAATATTTTAGCATGCCATGGCCTCACTAACTCATCTCTTGAAGTTGGGTTTCTTTCAGGCTTAAATAGGAGTGGAAAAAGTTGCAGGTTGAGATGGGTGAACTATTTGAAGCCTGGGCTCAAGAAAGGCCAAATAACACCTCAGGAAGAAGCCATCATTTTTGAGATACATACACTGCTGGGTAACAAGTGGTCTACAATAGCAAAATATTTGCCGGGTAGAACTGACAATGAGATTAAGAACTACTGGAGAACCCACTTCAAGAAGAAAGAGAAACCTTCCGTTCATAAGAAGATAGAAAAGCGCAAAGCAAAGGTGCTAAAACAGATGAAACAAGCAGAACAATTACCTCAAGAATATGATGCGAAAAGCATCTCGTCTCATGCAGAGACCACCTTTGAAGCAAACCTTTCTGAGATCACTCAAGACAACAACAATAACAACCAAGAGAACATGGCTAGCTTGCATTCAAACATTGAAGAAGACCAATATTACATGCCTTTCATCTATCAAGAGTTTCCATCCTTATTCCCAGACACAGCAGAAGATGATGCCTTGTGGGTTAACTTATGGAACCTTGATGAAACACAAGATAATGGAGTAAACCCGTTCAGTAAATATGCCATGAAAAACCAAGATCAAACTTCTTGTTTCGATGATATCTCCAATGACCTCTGCTATGCAAAATACATGTTTGGCTGA	1032	0.3992	MGSGAIAEKGWRKGPWTLEEDRLLIDYVSLQGEGGWSSVAKFAGLLRRRGEKGKNSEVLISTYVCLVVNVENEMIIKIYNSLIKHSLKEEGIKYIKLLFLNYGRGRYVSANILACHGLTNSSLEVGFLSGLNRSGKSCRLRWVNYLKPGLKKGQITPQEEAIIFEIHTLLGNKWSTIAKYLPGRTDNEIKNYWRTHFKKKEKPSVHKKIEKRKAKVLKQMKQAEQLPQEYDAKSISSHAETTFEANLSEITQDNNNNNQENMASLHSNIEEDQYYMPFIYQEFPSLFPDTAEDDALWVNLWNLDETQDNGVNPFSKYAMKNQDQTSCFDDISNDLCYAKYMFG	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2045	343	SUPERFAMILY	Homeodomain-like	9	50	IPR009057	-
	Glsi11g2045	343	Pfam	Myb-like DNA-binding domain	152	196	IPR001005	-
	Glsi11g2045	343	Pfam	Myb-like DNA-binding domain	13	47	IPR001005	-
	Glsi11g2045	343	Coils	Coil	206	226	-	-
	Glsi11g2045	343	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	147	201	IPR017930	-
	Glsi11g2045	343	Gene3D	-	156	228	-	-
	Glsi11g2045	343	ProSiteProfiles	Myb-like domain profile.	147	197	IPR001005	-
	Glsi11g2045	343	Gene3D	-	69	151	-	-
	Glsi11g2045	343	CDD	SANT	156	197	IPR001005	-
	Glsi11g2045	343	ProSiteProfiles	Myb-like domain profile.	8	55	IPR001005	-
	Glsi11g2045	343	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	10	271	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Glsi11g2045	343	SUPERFAMILY	Homeodomain-like	132	202	IPR009057	-
	Glsi11g2045	343	Gene3D	-	7	55	-	-
	Glsi11g2045	343	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	8	48	IPR017930	-
	Glsi11g2045	343	CDD	SANT	15	44	IPR001005	-
	Glsi11g2045	343	SMART	sant	12	69	IPR001005	-
	Glsi11g2045	343	SMART	sant	151	199	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2045	Glsi-ChrGlsi11	12939024	12940218	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2045	10	47	MYB Transcription Factor Family	AT3G30210	71.053	2.35e-10	58.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi11g2045		Myb_DNA-binding	4.1e-13	CL0123