Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2024 ATGTTTTCTTCTTCTTCAACTTCACTGATCAAATGGCGTTTCTTTCATAAACCCATGTTCCTTATGTTTGTTCTGGAATTCTACTTTCTCTTATGGGTCCTCTTCGTGTCTCAGAGTGACGCCGTTCCGGCCGATTCAGACAAATCAGTGCTTCTTCAGTTCAAGGATTCAGTCTCCGATCCGTCAGGGCTGCTTTCGAGCTGGAATTCGGCCGGTGATTCCAATCACTGTTCTTGGTTCGGTGTCTCCTGCGACTCTAGTTTACGGGTTGTCTCACTCAACATTACTGGAAATGGTGGTGGAGGTCATCGAAATTCTTTTCCGTGTTCTGATCCTGCTGAATTCCCACTTTACGGGTTTGGTATTAGGAGGAGCCGTGACGGTAGTAGAGGAGCATTGTTTGGAAAGGTTTCGCCTCTAATCAGTAAGTTTACTGAGCTTAGAATTCTGTCGCTTCCGTTCAACGGTTTCGAGGGAGAAATTCCTGACGAAATCTGGGGTATGGACAAGTTAGAGGTTCTCGACCTAGAGTGCAACTCCATGACTGGGTCTCTTCCTTCTCATTTTAATGGTTTGAGTAATTTGCGGGTTCTTAACCTCGGGTTTAATAGAATTATCGGGGAGATACCAAACGCAATTTCACGTCTTGGGAATTTGGAAATTTTGAATTTAGCTGCGAATGGCTTAAATGGATCTGTTCCTGGGTTCATTGGTAAGCTGAAAGGGGCATATCTATTGTTTAATCTGCTTAGTGGCCCTATACCACTTGAGATCGGGGAGAATTGTGGGAAGCTTGAGCATCTTGATTTGTCAGGTAATTTCTTAGTTCGGAAAGTTCCAAGCAGTTTGGGAAATTGTAGTCAATTACGGACACTTTTGCTGTATTCAAATTTGTTGGAGGAGGTTATTCCTCCCGAACTTGGTAATCTTAAGAAGCTTGAAGTGTTGGATGTTTCAAGGAATGCTCTCAGTGGTCCAGTCCCTCCTGAGATTGGGAGTTGTTCGGAGTTGTCCGTCCTTGTGCTATCAAATCTTTTCAATCCACTTCCAGAAGTCAACAACACTGCTAGGGACCCTTCAATGGAGCAATTGATTCCTATAAATGATGAATTGAATTATTTTGAAGGTGCACTGCCTGTGGAAATCACAACCCTTCCAAAGTTGAGAATATTATGGGCAGCAAGGGCGAACCTGGAAGGTAGTTTTCCAACTAGTTGGGGTGCTTGTGATAACTTAGAGATGGTCAATTTGGCTCAGAATTATTTCACTGGGGAGATTCCTAATGAGCTTAGTCGCTGCAAGAAGCTGCATTTTCTTGATTTAAGCTCAAACAACCTAACAGGGGAGCTCCCTGAAGAGCTTCCTGTTCCCTGTATGACTGTGTTTGATATTAGTGGGAATATCTTGTCTGGTTTAATTCCTGAATTCTCTAATAATACCTGTCCTTCAGTTCCTTCTTGGAATGGCAATTTGCTTGAACTTGACAACCTGTCAACTCCATATGGATCCTTTTTTGCATCAAAGGTTCATGATGGATCCCTTTTAACATTGGTGGGAGAAGTTGGTCTTTCAGTTACTCACAACTTTGGGTGGAACAACTTTACTGGCATACAGTCATTGCCAATAGCACGTGACAGACTGGGGAAGGAAACTGTTTACGCTTTTCTTGTTGGAGAAAACAAGCTCGCAGGAGCATTTCCTACCTGGTTATTTGATAAATGTGATGGATTAGATGCATTGCTCTTAAATGTCAGTTATAATAGGTTATCTGGCCAAATTCCTGCTAAGTTTAGTGAAATGTGCAGATCATTAAAAAATTTGGATGCATCTGGAAATCAGTTTACAGGACAAATTCCACGTGGCTTAGGGGATTCAGTATCTATTGTAGCTTTGAACCTCAGTTGGAATCACTTACAAGGTCAGATTCCCACCAGCCTTGGCCAGATAAAGGATTTGGTGTTTCTTTCCTTGGCTGGTAATAACTTAAGTGGCTCCATTCCTACCAGCCTGGAGCAGTTGTACTCTTTAAAAGTCTTGGATCTTTCTTCAAACTCTCTTACGGGTGAGATTCCAAAGGGTTTTGAGAACCTGAGAAATCTGACCGGTCTTCTGCTCAATAATAACAAACTTTTTGGACATATTCCTACTGGTTTGGCAAATGTCACTACACTTTCTGCATTTAATGTGTCCTTCAATAACTTATCTGGATCTTTGCCATCAAACAGTAACATGATAAAATGCAGCAGTGCTGTTGGGAATCCATTTTTACGTCCTTGCCATATGTTTTCTTTGACTGTGCCATCAGCAGATCAACAAGGACGGGTTGATGGTTCTAATTCTTATACTGCTGCACCACCAGAAGCTGCTGGCAAACCGAGCGGGACTGGTTTCAATTCTATTGAAATAGCATCTATAACATCTGCATCAGCCATTGTTTCTGTTCTTCTTGCCCTAATTGTTCTTTTCTTTTATACTCGCAAGTGGAACTCCAGGTCCAGGGTTATTGGTTCCACAAGAAAAGAAGTTATAGTTTTTACTGATATTGGGGTTCCATTGACTTTTGAAAATGTTGTTCGTGCCACGGGAAATTTCAATGCTAGCAACTGCATCGGAAATGGAGGATTTGGAGCAACCTATAAAGCAGAGATATCACCAGGAAATTTAGTGGCAATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGTTCAACAATTTGATGCAGAGATTAGGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTTTGTTTGGTTATCATGCTAGTGAGACAGAGATGTTTCTTATATACAATTATTTGCCAGGTGGTAATCTGGAAAAGTTTATCCAGGAGAGGTCCACAAGGGCTGTGGATTGGAGAATTCTTCATAAGATTGCATTGGACATAGCCCGTGCACTGGCCTACCTACATGATCAGTGTGTACCACGTGTTCTTCATCGTGATGTCAAGCCCAGCAATATCTTGTTGGATGATGATTTTAATGCGTATCTATCTGACTTTGGATTGGCCAGACTTCTTGGGACTTCAGAAACCCATGCTACCACTGGTGTGGCAGGAACATTTGGGTATGTTGCTCCTGAATATGCCATGACTTGTCGGGTATCTGACAAAGCCGATGTGTATAGCTATGGTGTTGTGCTTCTGGAGTTGCTCTCAGACAAGAAAGCATTAGATCCTTCTTTTTCGTCTTATGGGAATGGTTTCAACATAGTAGCGTGGGCGTGCCTGCTAATGCGGCAAGGCAGAGCAAAAGAATTCTTCACTGCTGGGTTATGGGATGAGGCACGTGCAGATGATTTGGTAGAGGTCTTACACTTGGCCATTATGTGTACGGTTGACTCCCTCTCTACCAGACCTTCAATGAAACAGGTTGTACGACGGCTTAAGCAACTTCAACCGCCATCATGCTAG 3432 0.4269 MFSSSSTSLIKWRFFHKPMFLMFVLEFYFLLWVLFVSQSDAVPADSDKSVLLQFKDSVSDPSGLLSSWNSAGDSNHCSWFGVSCDSSLRVVSLNITGNGGGGHRNSFPCSDPAEFPLYGFGIRRSRDGSRGALFGKVSPLISKFTELRILSLPFNGFEGEIPDEIWGMDKLEVLDLECNSMTGSLPSHFNGLSNLRVLNLGFNRIIGEIPNAISRLGNLEILNLAANGLNGSVPGFIGKLKGAYLLFNLLSGPIPLEIGENCGKLEHLDLSGNFLVRKVPSSLGNCSQLRTLLLYSNLLEEVIPPELGNLKKLEVLDVSRNALSGPVPPEIGSCSELSVLVLSNLFNPLPEVNNTARDPSMEQLIPINDELNYFEGALPVEITTLPKLRILWAARANLEGSFPTSWGACDNLEMVNLAQNYFTGEIPNELSRCKKLHFLDLSSNNLTGELPEELPVPCMTVFDISGNILSGLIPEFSNNTCPSVPSWNGNLLELDNLSTPYGSFFASKVHDGSLLTLVGEVGLSVTHNFGWNNFTGIQSLPIARDRLGKETVYAFLVGENKLAGAFPTWLFDKCDGLDALLLNVSYNRLSGQIPAKFSEMCRSLKNLDASGNQFTGQIPRGLGDSVSIVALNLSWNHLQGQIPTSLGQIKDLVFLSLAGNNLSGSIPTSLEQLYSLKVLDLSSNSLTGEIPKGFENLRNLTGLLLNNNKLFGHIPTGLANVTTLSAFNVSFNNLSGSLPSNSNMIKCSSAVGNPFLRPCHMFSLTVPSADQQGRVDGSNSYTAAPPEAAGKPSGTGFNSIEIASITSASAIVSVLLALIVLFFYTRKWNSRSRVIGSTRKEVIVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEISPGNLVAIKRLAVGRFQGVQQFDAEIRTLGRLRHPNLVTLFGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACLLMRQGRAKEFFTAGLWDEARADDLVEVLHLAIMCTVDSLSTRPSMKQVVRRLKQLQPPSC 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2024 1143 ProSiteProfiles Protein kinase domain profile. 864 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2024 1143 ProSitePatterns Protein kinases ATP-binding region signature. 870 892 IPR017441 GO:0005524
Glsi11g2024 1143 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 372 1137 - -
Glsi11g2024 1143 Gene3D Ribonuclease Inhibitor 454 757 IPR032675 -
Glsi11g2024 1143 Gene3D Ribonuclease Inhibitor 243 453 IPR032675 -
Glsi11g2024 1143 SUPERFAMILY L domain-like 242 741 - -
Glsi11g2024 1143 Gene3D Phosphorylase Kinase; domain 1 825 939 - -
Glsi11g2024 1143 Gene3D Transferase(Phosphotransferase) domain 1 940 1140 - -
Glsi11g2024 1143 Pfam Protein kinase domain 867 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2024 1143 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 522 764 - -
Glsi11g2024 1143 Gene3D Ribonuclease Inhibitor 43 242 IPR032675 -
Glsi11g2024 1143 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515
Glsi11g2024 1143 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 940 1142 - -
Glsi11g2024 1143 Pfam Leucine rich repeat N-terminal domain 44 85 IPR013210 -
Glsi11g2024 1143 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 828 939 - -
Glsi11g2024 1143 SUPERFAMILY L domain-like 45 345 - -
Glsi11g2024 1143 SUPERFAMILY Protein kinase-like (PK-like) 846 1135 IPR011009 -
Glsi11g2024 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 360 450 - -
Glsi11g2024 1143 Pfam Leucine rich repeat 655 710 IPR001611 GO:0005515
Glsi11g2024 1143 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Glsi11g2024 1143 SMART LRR_typ_2 673 696 IPR003591 -
Glsi11g2024 1143 SMART LRR_typ_2 262 286 IPR003591 -
Glsi11g2024 1143 SMART LRR_typ_2 697 720 IPR003591 -
Glsi11g2024 1143 SMART LRR_typ_2 168 191 IPR003591 -
Glsi11g2024 1143 SMART LRR_typ_2 310 334 IPR003591 -
Glsi11g2024 1143 SMART LRR_typ_2 192 216 IPR003591 -
Glsi11g2024 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 348 - -
Glsi11g2024 1143 PRINTS Leucine-rich repeat signature 436 449 - -
Glsi11g2024 1143 PRINTS Leucine-rich repeat signature 673 686 - -
Glsi11g2024 1143 CDD STKc_IRAK 870 1138 - -
Glsi11g2024 1143 MobiDBLite consensus disorder prediction 773 793 - -
Glsi11g2024 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 984 996 IPR008271 GO:0004672|GO:0006468
Glsi11g2024 1143 SMART serkin_6 864 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2024 Glsi-ChrGlsi11 12783680 12787111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2024 41 1143 Receptor kinase-like Gene Family AT3G02130 66.369 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Glsi11g2024 Pkinase 5.4e-43 CL0016