Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2017 ATGGCATTCATCAATAAAATTGGAAAGCTTCTCAAGCATTCTGCTTTCAGGCCCGTCAATATAGAATTTTCTGCATCTACTCCATCAATTTACCATGCAATCAGGTCCATGTCATCTGCAAGGGTTTTTGTTGGAGGTGTTTCATATAGTACAGATGATATGAGTCTGAGAGAAGCCTTTGCTCGCTATGGAGAGATAATTGATGCAAGGGTAATACTGGATCGTGAGACTGGTAGATCCAGAGGCTTTGGCTTTGTAACTTTTGCATCAAGTGAGGATGCATCTTCTGCTGTTCAGGGTATGGATGGCCAGGATCTTCATGGTCGCAGGATACGAGTAAACTATGCTACAGAAAGGTCACGCCCAGGGTTTGGTGGAGGTGGTGGCTTCTATGGTGGTGGCAGCGGCAGCTATGCTAGAAGTAACTATGGAGGTGGTGATAACTCTATGAATGGAAGTTATGGAAGCAGTGGTGACAGTTTCAGGGGCAGTGGAAATTATGGTGTTCCGGGTAGTGCTGGTGGCAGTAACTACCAATTCAATGAAAACTCTGGTGGAGAAGCTGGCTTTGGCTTTGGCAGCAGTGAAGTGAATAGAAATTCTGGTTTGGGAGATGATGATGGCCAATTTGGTAGCAACCAAAATGAAGAATCAGGCATAGATGATGAAGACAAATTGAGAGAGAAGAATGATGAACCAGATGATTATGCTCACACCCGGCACTAA 726 0.4449 MAFINKIGKLLKHSAFRPVNIEFSASTPSIYHAIRSMSSARVFVGGVSYSTDDMSLREAFARYGEIIDARVILDRETGRSRGFGFVTFASSEDASSAVQGMDGQDLHGRRIRVNYATERSRPGFGGGGGFYGGGSGSYARSNYGGGDNSMNGSYGSSGDSFRGSGNYGVPGSAGGSNYQFNENSGGEAGFGFGSSEVNRNSGLGDDDGQFGSNQNEESGIDDEDKLREKNDEPDDYAHTRH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2017 241 SUPERFAMILY RNA-binding domain, RBD 26 147 IPR035979 GO:0003676
Glsi11g2017 241 MobiDBLite consensus disorder prediction 187 241 - -
Glsi11g2017 241 SMART rrm1_1 41 114 IPR000504 GO:0003723
Glsi11g2017 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Glsi11g2017 241 Gene3D - 23 136 IPR012677 -
Glsi11g2017 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Glsi11g2017 241 MobiDBLite consensus disorder prediction 218 241 - -
Glsi11g2017 241 MobiDBLite consensus disorder prediction 194 216 - -
Glsi11g2017 241 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 138 - -
Glsi11g2017 241 CDD RRM2_NsCP33_like 41 116 - -
Glsi11g2017 241 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2017 Glsi-ChrGlsi11 12760572 12762523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2017 42 120 Eukaryotic Initiation Factors Gene Family AT1G49760 34.177 2.05e-06 46.6