Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2003 ATGGACTACACCACTTTGCCGGGATTGCAGTCAAATCCAACACCAACACCCCTTGCTTCTTACCCACCTTCTGTAGGCACTTATGTTCCTCTAAACCCTACCCATTACCAATCTTACCCTCAAAACCCTAACCCATCTTCCGCAGACCCTCAATCTTATGTTGTTACACATGAACTCCATGGTAGCGCCGGTTCGGAACCTGGTGTCAACCCGCCTGGTGTTGATTCCTATGCCCCCTTGACATCCAATTCAGTTAGCCATCTGGGTCATGAAGGCCATGCCAATTACTCGTACGGTCACAACCTTGTGGTTGATTCGAGCTCATTGGTGGCGTCTTCTGGGTACTATTTAGACCCGAATGCGCAGGATTGGGCTGCGAGGGAGGCTGTTAGGCAGTACGGGGTAGATCCGATTAGCTATGGAACGGGCATCTCTATGCCTTCAAGTGGGTCAGAGCAACTGGCTATTGCAAATCCTAACTCCACATGGTGGGCCAACACCACAACTCAGCCTCAGGACAATGGAACATGGAAGAAACGCCAAAAGAAAACTAAAACTAAGATTGTCCAATCTGCATATTGTGAAGTTTGTAAGATAGATTGCACAAGCAAGGATGTTCTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACTTGGGGAAACTAAGAGAAGCATTAAGGCCACCACAAGTTCCTCCCTCTGGGTTATCTAATCCTGTTATAGGACCTCAACCACAGGCGGACAAGAGCAAATCTGTTAGCGGGAGTAAGAGTAAAAGAAAAACAGTTGAAACTCCGGAGGACTTGGAGAAAAAGAAAAGGAAGGTTCTTGAAGGGGGGGCCGCAGCAGAAGCAGTTAAAATATGTGCTGTATGTAATGTGGTATGTAATAGTGAGACAGTCTTCAACTATCATCTTGCAGGGCAAAAGCATGCTGCTATGATGAAGAAACAAGCATCTGAACATAAGCAATCAAATGATGGCTGA 990 0.4636 MDYTTLPGLQSNPTPTPLASYPPSVGTYVPLNPTHYQSYPQNPNPSSADPQSYVVTHELHGSAGSEPGVNPPGVDSYAPLTSNSVSHLGHEGHANYSYGHNLVVDSSSLVASSGYYLDPNAQDWAAREAVRQYGVDPISYGTGISMPSSGSEQLAIANPNSTWWANTTTQPQDNGTWKKRQKKTKTKIVQSAYCEVCKIDCTSKDVLDQHKLGKKHKKNLGKLREALRPPQVPPSGLSNPVIGPQPQADKSKSVSGSKSKRKTVETPEDLEKKKRKVLEGGAAAEAVKICAVCNVVCNSETVFNYHLAGQKHAAMMKKQASEHKQSNDG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2003 329 SMART c2h2final6 288 312 IPR013087 -
Glsi11g2003 329 SMART c2h2final6 192 216 IPR013087 -
Glsi11g2003 329 MobiDBLite consensus disorder prediction 254 270 - -
Glsi11g2003 329 MobiDBLite consensus disorder prediction 1 15 - -
Glsi11g2003 329 PANTHER ZINC FINGER PROTEIN 385B-LIKE 49 326 - -
Glsi11g2003 329 MobiDBLite consensus disorder prediction 218 270 - -
Glsi11g2003 329 SMART ZnF_U1_5 285 319 IPR003604 GO:0003676|GO:0008270
Glsi11g2003 329 SMART ZnF_U1_5 189 223 IPR003604 GO:0003676|GO:0008270
Glsi11g2003 329 MobiDBLite consensus disorder prediction 30 51 - -
Glsi11g2003 329 SUPERFAMILY beta-beta-alpha zinc fingers 186 223 IPR036236 -
Glsi11g2003 329 Gene3D Classic Zinc Finger 256 321 - -
Glsi11g2003 329 Gene3D Classic Zinc Finger 171 222 - -
Glsi11g2003 329 SUPERFAMILY beta-beta-alpha zinc fingers 287 324 IPR036236 -
Glsi11g2003 329 MobiDBLite consensus disorder prediction 1 51 - -
Glsi11g2003 329 Pfam Zinc-finger of C2H2 type 289 312 - -
Glsi11g2003 329 Pfam Zinc-finger of C2H2 type 193 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2003 Glsi-ChrGlsi11 12673129 12675418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2003 188 316 C2H2 Transcription Factor Family AT5G61190 34.848 3.14e-14 72.0