Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1979 ATGGTCCCCAACAACGGCAAGTCCGCCACGGCGCCGCCGCTGCGCCCCACGATTACTCTCCCGCCGCGCCCTCCTATTGAGGCTTTCTTCTCCGGCGGGGCAAGTCCCGGCCCCATGACCCTCGTCTCCAGCTTCTTTTCCGACAACTACCCTGACTCCGACTGTCGGTCTTTCTCTCAGTTGCTTGCCGGAGCTATGGCTTCTCCTCTTGCGCTTGGTGCGATGCCTGGCTTCTTTCCGGACAATTTGACCGACAATTCCTCCAAAGGAGCGGGTGCCGAGGATGGAAACAAGAGGAATCTGGGGTTCAAGCAGAGTAGGCCTATGAATTTGGTGATTGCTCATTCACCATTATTTACCATTCCACCTGGGTTAAGCCCTTCTGGATTGCTTAACTCGCCCGGCTTCTTTCCGCCGCAGAGCCCCTTTGGGATGTCCCACCAGCAGGCTCTAGCACAGGTTACAGCTCAAGCTGTCTTTGCACAATCCAATATGCACATGCAAGCTGATTATCAGCCATCTGCAGCTACAGCTCCTGCCGAACCATTGGAACAGCAGACATCCTTTATTCCTGGTGAAGCTTCAGAGCAGCAAGTGGCACCATCAGTATCAGATCCCAGAAGCACCCAAATGGAGACATCAGAGATATCTCATGTTGATAAGAAACATCAACTACCTTCCTCGGCCATTGATAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGGCAAAAGCAGGTTAAGGGGAGTGAGTATCCACGGAGCTACTACAAGTGTACACATCTGAATTGCCCAGTAAAAAAAAAGGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAATCATGAAGTGCCTCAGCCAAACAGGCGTATTAAGGATAATAGTGATTCAAATGGAAATACAAGCACTCAAGCTAAGCCTGAGTTAATTTCACAAAGTTGTGTTGGAAATTTAAACAAGTTTGGAGAAAGCATGCCTGATTATTCAGTGCCCGAGAGTGATCAATCATCCAATCAAGGAGCTTACAGGCAGTTACCTGGATCAAGTGAGAGTGAGGAAGCGGGTACGGGTGATGCACATATTAGGGAGGAGGAAGGAGATGACGGTGAGCCAAACCCTAAGAGGAGGAACACTAGTATTGGGGCTTCTGAAGTGCCTATGTCTCACAAGACTGTCACAGAACCCAAAATCATCGTGCAAACAAGAAGCGAAGTGGATCTTCTCGATGATGGCTACAGGTGGCGCAAGTATGGGCAGAAAGTTGTAAAGGGAAATCCTCATCCCAGGAGTTATTACAAATGCACTAGTGCAGGATGCAATGTGCGCAAGCACGTTGAGAGAGCTTCAACAGACCCCAAAGCTGTCATAACTACCTATGAGGGAAAACATAACCATGATGTACCTGTTGCTAGAAACAGCAGCCACAACACAGCTCCTAGCAATTCAATGCCATTAAAACCACATAAAGTGGTTCCTGAGAAGCACCCGTTGCTTAAAGATATGGATTTTGGAAATAATGGCCAAAGACCGGCTGTTTTACGCTTAAAAGAAGAGCAGATCATCGTATAG 1593 0.4834 MVPNNGKSATAPPLRPTITLPPRPPIEAFFSGGASPGPMTLVSSFFSDNYPDSDCRSFSQLLAGAMASPLALGAMPGFFPDNLTDNSSKGAGAEDGNKRNLGFKQSRPMNLVIAHSPLFTIPPGLSPSGLLNSPGFFPPQSPFGMSHQQALAQVTAQAVFAQSNMHMQADYQPSAATAPAEPLEQQTSFIPGEASEQQVAPSVSDPRSTQMETSEISHVDKKHQLPSSAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEVPQPNRRIKDNSDSNGNTSTQAKPELISQSCVGNLNKFGESMPDYSVPESDQSSNQGAYRQLPGSSESEEAGTGDAHIREEEGDDGEPNPKRRNTSIGASEVPMSHKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPVARNSSHNTAPSNSMPLKPHKVVPEKHPLLKDMDFGNNGQRPAVLRLKEEQIIV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1979 530 SMART WRKY_cls 416 475 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 SMART WRKY_cls 234 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 MobiDBLite consensus disorder prediction 363 382 - -
Glsi11g1979 530 FunFam WRKY transcription factor 33 403 469 - -
Glsi11g1979 530 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 133 491 IPR044810 GO:0003700
Glsi11g1979 530 MobiDBLite consensus disorder prediction 83 103 - -
Glsi11g1979 530 MobiDBLite consensus disorder prediction 337 359 - -
Glsi11g1979 530 SUPERFAMILY WRKY DNA-binding domain 233 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 MobiDBLite consensus disorder prediction 299 327 - -
Glsi11g1979 530 ProSiteProfiles WRKY domain profile. 229 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 MobiDBLite consensus disorder prediction 473 495 - -
Glsi11g1979 530 FunFam WRKY transcription factor 221 294 - -
Glsi11g1979 530 Pfam WRKY DNA -binding domain 417 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 Pfam WRKY DNA -binding domain 235 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 SUPERFAMILY WRKY DNA-binding domain 408 476 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 MobiDBLite consensus disorder prediction 214 239 - -
Glsi11g1979 530 MobiDBLite consensus disorder prediction 284 298 - -
Glsi11g1979 530 MobiDBLite consensus disorder prediction 193 213 - -
Glsi11g1979 530 Gene3D WRKY domain 220 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 Gene3D WRKY domain 401 477 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 ProSiteProfiles WRKY domain profile. 411 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g1979 530 MobiDBLite consensus disorder prediction 1 23 - -
Glsi11g1979 530 MobiDBLite consensus disorder prediction 284 397 - -
Glsi11g1979 530 MobiDBLite consensus disorder prediction 193 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1979 Glsi-ChrGlsi11 12526618 12530780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1979 3 528 WRKY Transcription Factor Family AT2G03340 53.493 4.95e-153 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi11g1979 WRKY 1.1e-25 CL0274