Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1978 ATGGGTTGCATTAACTCCAAGAAGTTGGTTGCCAAAGCTTCGCCCGTACATGTGCATTCGGTGGCGCGCACCGATAATGGGTCTGCGATTGTGGAGCCTCCGTCCAGAACCCAATCGGGGATATTAGCTTTTGAGAACCAAGGGGATGGAAAATCGGAGGATCGCAGTCGAGATGGGAAGACATCCAAGAAGGATATCTCCAGAGGAAGTGGGAATTTCAGTTTCAGGATGGGGTTTTCGCATAGGTTTGTGGAAGCGGAGCAGAATGCGGCTGGATGGCCCTCTTGGCTCACCGCTGCTGCAGGGGAAGCTATTCATGGATGGATGCCCCTCAGAGCAGATTCTTTTGAGAAATTAGACAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACGGGGAGGATGGTTGCTCTGAAGAAGGTGCGATTTGACAATTTTCAACCGGAGAGTGTAAGGTTCATGTCAAGAGAAATAACAATTCTTCGCAGGCTTGACCATCCAAACGTCATGAAATTGGAGGGTTTAATTACTTCCCGACAATCAAAGAGCATATACCTTGTGTTTGAATATATGGAGCATGATCTTGCAGGACTAGTATCTTGTCCTGACATCAAGTTCAGTGATTCACAGGTTAAATGTTACATGAGGCAGCTATTTAGTGGACTTGAGCACTGTCACCTCCGCGGTATTATGCATCGAGACATCAAAGTATCCAATATATTAGTAAATAATGACGGTGTTCTCAAGATAGCAGATTTTGGATTAGCAAATATAATTAACCCAAATAATGGGCATCCATTGACCAGTCGCGTAGTGACTTTATGGTACCGTCCTCCTGAACTCTTGATGGGATCAACGAATTATGGAGTATCAGTGGATCTGTGGAGCGTGGGCTGTGTATTTGCAGAACTTTTTCTCGGGAAGCCTATCATTAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGCGGTTCTCCACCTGATGAGTTCTGGAAGAAATCCAAGCTTCCTCATGCAACTATGTTTAAACCTCAGACAAATTATGAAAGCTCTTTACGGGAGAGGTGTCAAGATTTTCCAGTAACCGCTGTAAACCTAATAGAGACTTTACTATCCATTGACCCCCAAAAGCGTGGAACTGCCTCTTCTGCCCTGATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTGATCCGTCAAGCCTGCCAAAGTATCCACCTAACAAAGAAATGGATGCTAAAAATCGGGAAGATATACGCAGGAAAAAAACTGGAGGTAAAGTGCAAGAGGCTGCAACATCAAGAAAGCAAAGACGAGCCCGTAAAATTTTGCAAGAGCCTAACAATTTGAATAAAGCAGCCACAACAGAGGAAAAGCAGAACATTTCTCAAAAAGCTCTTAGAGATGATGTTAAAGCACATCTTACCAAGGGAAAAGGAGGAGCTATGCACAATGAGCCATCAAAGCCTTCAATGGATGTAATGTCAGAGACTTCCCGGATTATGAATGGAGCTCATGGCTACAGTATATTCTCAGGACCAGCACCAGTCTCCGTATCCAGTGGCTTTACATGGGCAAAAAGGAGAAAACCAGATACTTCATCCACATTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTGGATCCAACCTTTGCAAAAGGAACATATGATTTAACCAGGCATGTGATCGATGTCTCAGAAAGAAGACGCAAGGACAACACAGTCCACCGGGGTGAGACTACCAAGCATGTTATACACCAGGCTCAGCATGGTTGGCCAGAATCTTGTGATGCAGCTGATACATACCATTGTTCAACAGTAACCATGGATTTTGATCCCACAGAACTAACGGACGTTCAGATTAATACTCAGGTAAGTTTGAAAATTGAGATCATCAGGCAACTTCAAACAAATGCAAATGCTTTTGATCACATAAAAACCGCAAGGGCCACAGATCACATAAATCTGATAAATTTTTGCAAAAGAATGAGAGTATGCGCCAAGCAGCTGGCAAATCAAGGTTCGGAAGAGTGCTATACCCTTGCATCACAAGACTTGAGTGTTAACATCGGCTTATCTAAGGAGCAACACTTCAGTTACAAAACACAAATGTACAGTGCCCACTTGGAAGATGAACGCTCTTTTGTTTTTTAG 2187 0.4358 MGCINSKKLVAKASPVHVHSVARTDNGSAIVEPPSRTQSGILAFENQGDGKSEDRSRDGKTSKKDISRGSGNFSFRMGFSHRFVEAEQNAAGWPSWLTAAAGEAIHGWMPLRADSFEKLDKIGQGTYSSVFRAREVETGRMVALKKVRFDNFQPESVRFMSREITILRRLDHPNVMKLEGLITSRQSKSIYLVFEYMEHDLAGLVSCPDIKFSDSQVKCYMRQLFSGLEHCHLRGIMHRDIKVSNILVNNDGVLKIADFGLANIINPNNGHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPIIKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPHATMFKPQTNYESSLRERCQDFPVTAVNLIETLLSIDPQKRGTASSALMSEYFSTKPYACDPSSLPKYPPNKEMDAKNREDIRRKKTGGKVQEAATSRKQRRARKILQEPNNLNKAATTEEKQNISQKALRDDVKAHLTKGKGGAMHNEPSKPSMDVMSETSRIMNGAHGYSIFSGPAPVSVSSGFTWAKRRKPDTSSTLSDGSRSKISALDPTFAKGTYDLTRHVIDVSERRRKDNTVHRGETTKHVIHQAQHGWPESCDAADTYHCSTVTMDFDPTELTDVQINTQVSLKIEIIRQLQTNANAFDHIKTARATDHINLINFCKRMRVCAKQLANQGSEECYTLASQDLSVNIGLSKEQHFSYKTQMYSAHLEDERSFVF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1978 728 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1978 728 MobiDBLite consensus disorder prediction 409 475 - -
Glsi11g1978 728 FunFam probable serine/threonine-protein kinase At1g54610 103 198 - -
Glsi11g1978 728 CDD STKc_CDK9_like 116 400 - -
Glsi11g1978 728 MobiDBLite consensus disorder prediction 419 455 - -
Glsi11g1978 728 MobiDBLite consensus disorder prediction 30 45 - -
Glsi11g1978 728 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1978 728 MobiDBLite consensus disorder prediction 24 69 - -
Glsi11g1978 728 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Glsi11g1978 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Glsi11g1978 728 SUPERFAMILY Protein kinase-like (PK-like) 109 406 IPR011009 -
Glsi11g1978 728 PANTHER CELL DIVISION PROTEIN KINASE 114 404 - -
Glsi11g1978 728 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1978 728 FunFam probable serine/threonine-protein kinase At1g54610 199 439 - -
Glsi11g1978 728 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
Glsi11g1978 728 Gene3D Transferase(Phosphotransferase) domain 1 199 440 - -
Glsi11g1978 728 MobiDBLite consensus disorder prediction 48 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1978 Glsi-ChrGlsi11 12514826 12523822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1978 108 446 Core Cell Cycle Gene Families AT5G10270 45.763 1.53e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi11g1978 Pkinase 1.6e-68 CL0016