Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1977 ATGGTTTATTCGTCCTTATACGTTGATCCCAATTTGAAAATGGATGGATTGACAGGCCGTGGTGGCGCTGTTCTGGACATGTTTTTACCAAATTATAAGTTGGGGAAAACTCTTGGCATTGGATCCTTCGGTAAGGTGAAAATTGCAGAGCATGTTTTGACAGGTCATAAAGTTGCCATCAAGATCCTTAACCGCCGTAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGGAGGGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATCATACGGCTTTATGAGGTTATAGAAACTCCAACGGACATATATGTTGTTATGGAGTATGTAAAATCTGGAGAGCTCTTTGACTACATAGTAGAAAAGGGTAGGTTGCAAGAAGATGAGGCCCGTAATTTTTTTCAGCAGATCATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGAGACCTGAAGCCTGAGAATTTACTGTTGGATTCCAAATGCAATGTTAAAATTGCTGATTTTGGTTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGGAGCCCAAACTATGCTGCTCCAGAGGTTATATCTGGGAAATTGTATGCTGGACCTGAGGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTATGTGGCACCCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATTTATCACCTGGTGCTAGAGATTTGATACCGAGGATGCTTGTGGTTGACCCCATGAAGAGGATGACCATACCTGAGATCCGTCAACATCCATGGTTCCAAGCACATCTCCCGCGATATTTAGCAGTTGCACCGCCAGATACTATGCAACAAGCCAAAAAGATTGATGAGGAAATTCTTCAGGAAGTGATTAAGATGGGATTTGACAGGAATCAGTTGGTTGAATCTCTTCGCAACAGGATGCAAAATGAGGGTACTGTAGCATACTATTTGCTATTGGACAATCGATTCCGTGTTTCAACTGGCTATCTTGGTGCTGAGTTTCAAGAGAGTATGGATACTGGTTTTAACCGTATGCATCCCAGTGAAGTTACTGCTTCAGCTGTTGGGCACCGCTTACCCGGGTACATGGATTATCAAGGAAGTGGATTGAGACCACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGTCTTCAGTCTCGAGCCCATCCTCGTGAAATTATGACTGAGGTTCTTAAAGCTCTGCAAGCATTGAATGTGTGTTGGAAGAAGGTTGGACACTATAACATGAAGTGCAGGTGGATTGCTGGCATTCTGGATCATGGTGAAGGAATGGTTAACAATCACTACTTTGAAGATGATTCCACCATTATTGAGAATGATGCTGTTTCTAGGTCAAATGTAGTCAAGTTTGAAGTGCAGCTTTATAAAACCCGTGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGCCCTCAGTTTCTCTTCTTGGATCTTTGTGCTTCTTTCCTTGCACAGCTTCGTGTCCTCTAA 1569 0.4213 MVYSSLYVDPNLKMDGLTGRGGAVLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQAHLPRYLAVAPPDTMQQAKKIDEEILQEVIKMGFDRNQLVESLRNRMQNEGTVAYYLLLDNRFRVSTGYLGAEFQESMDTGFNRMHPSEVTASAVGHRLPGYMDYQGSGLRPQFPVERKWALGLQSRAHPREIMTEVLKALQALNVCWKKVGHYNMKCRWIAGILDHGEGMVNNHYFEDDSTIIENDAVSRSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCASFLAQLRVL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1977 522 CDD AMPKA_C 402 519 - -
Glsi11g1977 522 PANTHER SERINE/THREONINE KINASE 31 349 - -
Glsi11g1977 522 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Glsi11g1977 522 FunFam Non-specific serine/threonine protein kinase 23 362 - -
Glsi11g1977 522 CDD STKc_AMPK_alpha 29 284 - -
Glsi11g1977 522 CDD UBA_SnRK1_plant 306 346 - -
Glsi11g1977 522 FunFam Non-specific serine/threonine protein kinase 25 111 - -
Glsi11g1977 522 SUPERFAMILY UBA-like 296 343 IPR009060 GO:0005515
Glsi11g1977 522 FunFam Non-specific serine/threonine protein kinase 408 520 - -
Glsi11g1977 522 Pfam UBA/TS-N domain 306 342 IPR015940 -
Glsi11g1977 522 SMART uba_6 307 344 IPR015940 -
Glsi11g1977 522 ProSiteProfiles Protein kinase domain profile. 32 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1977 522 SUPERFAMILY Protein kinase-like (PK-like) 29 300 IPR011009 -
Glsi11g1977 522 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 473 521 IPR001772 -
Glsi11g1977 522 Gene3D Transferase(Phosphotransferase) domain 1 24 362 - -
Glsi11g1977 522 SUPERFAMILY KA1-like 341 521 IPR028375 -
Glsi11g1977 522 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 305 345 IPR015940 -
Glsi11g1977 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Glsi11g1977 522 SMART serkin_6 32 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1977 522 Pfam Kinase associated domain 1 479 521 IPR001772 -
Glsi11g1977 522 Gene3D Kinase associated domain 1, KA1 408 520 - -
Glsi11g1977 522 Pfam Protein kinase domain 32 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1977 Glsi-ChrGlsi11 12508596 12514773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1977 32 284 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 8.15e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Glsi11g1977 Pkinase 9.7e-81 CL0016