Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1976 ATGGCAAGGAAGAGAAAGGCTGTTGAATTAGAGGAAGAAAGAAATGGCATGGCCAGGGATGAGATTATGAAGGAAGCTGTAGCACTAGGAGAAAGGAGCGGGAGAGCTAGAAAGCGATTTGTTGGGGTGAGGCAAAGGCCTTCAGGACGATGGGTAGCTGAGATTAAAGACACCATTCAAAAGATAAGGGTTTGGTTGGGAACTTTTGACACAGCCGAGGAAGCAGCCAGGGCTTATGACGAGGCTGCTTGTCTGCTTCGTGGTGCCAACACTAGAACAAACTTTTGGCCTTGTTCTCAATCTTCCTCCACCCCAGCTCTTCCCTCCAAGATCACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAATAACTCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTAGTTCTCTACTTATCAACCACCAACAAAAGCAACAAGCAGAAGAATCAGCGGATTTCTCAGTTGACCAATTTACTGATTTCCTTAATGATCCTGAGGATTATAACGCAAGCAACAATGGCTTCACTAATGATGCTGATAGTGCTCAAGTTGATTACTTTGCGAGTAGTTTTGAATCATGTTTAACTGAAAAGAATTTGGAAAATAATTGCAGCAATGTCACACAAACTTCAAGTGCTGACAGCAATTCCGGAGGGGAAAGAGAGGAAGACATCGAAGACGAAAGCACCGATGTGGGTGTCCAAGATTTTCAATTTCTTGACAATATCGTTGCTCCATCATGTTACTATTCTCCTTTTGAGATGGCTGAAGAGATGGAGGACCCTGTGGAGGAGCCAGCGGACTTTGCCGATGACCCTTCAATGCTCAGAGCTGCTATGAAGAGGATGAAGTATGAGAGGAACTTCTCAGCTTTCCTTTATGCATTCAATGGAATACCCGAGTGCTTGAAGTTGAAACTAGGAACAGGAAATTTGAAGGGAAGAGGAATTTCTGATCATCTAACCAGCCTCCAGATGGCTTGTAGCAAGAACAAAATTGAGGAGCATAAGGAGGAAAAAGAAGACTTGGGAGCAATGGATAGGAAAGAGGAAGAAAACCCTCAAACATCAATGGACATGGTGTGTTCTTCGTCGTCATCCAGTGTTGATGGTGAACTGTTACTTTGGAACTCACTGGATCTTCCTCCCATCTGCTTTGTTAACTAA 1173 0.4382 MARKRKAVELEEERNGMARDEIMKEAVALGERSGRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSTPALPSKITNLLLQRLKARNNSCSSSSSSSSSSSSLLINHQQKQQAEESADFSVDQFTDFLNDPEDYNASNNGFTNDADSAQVDYFASSFESCLTEKNLENNCSNVTQTSSADSNSGGEREEDIEDESTDVGVQDFQFLDNIVAPSCYYSPFEMAEEMEDPVEEPADFADDPSMLRAAMKRMKYERNFSAFLYAFNGIPECLKLKLGTGNLKGRGISDHLTSLQMACSKNKIEEHKEEKEDLGAMDRKEEENPQTSMDMVCSSSSSSVDGELLLWNSLDLPPICFVN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1976 390 MobiDBLite consensus disorder prediction 337 357 - -
Glsi11g1976 390 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Glsi11g1976 390 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 292 - -
Glsi11g1976 390 MobiDBLite consensus disorder prediction 337 364 - -
Glsi11g1976 390 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Glsi11g1976 390 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Glsi11g1976 390 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Glsi11g1976 390 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Glsi11g1976 390 MobiDBLite consensus disorder prediction 207 232 - -
Glsi11g1976 390 MobiDBLite consensus disorder prediction 125 152 - -
Glsi11g1976 390 FunFam ethylene-responsive transcription factor RAP2-11 38 97 - -
Glsi11g1976 390 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Glsi11g1976 390 CDD AP2 38 95 IPR001471 GO:0003700|GO:0006355
Glsi11g1976 390 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Glsi11g1976 390 Coils Coil 328 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1976 Glsi-ChrGlsi11 12501371 12502543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1976 31 115 AP2-EREBP Transcription Factor Family AT5G19790 69.412 9.72e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g1976 AP2 7.4e-15 CL0081