Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1973 ATGGCAGCTTGTATAATCACGGTTTCACAGAACGGAAACGGGGACTATCGGACGGTGCAGGAAGCAATTGATGCTATCCCACTCGGTAACAAGCGTCGGACGGTGATTCGAGTGTCGCCGGGAGTCTACAAGCAGCCGGTGTACGTGCCCAAGACTAAGAATTTCATCACCCTCGCTGGTCTGCGCCCGGAGAATACTGTGCTTACCTGGAACAACACCGCCACCAGAATCGAACACCATCAGGCTGCTCGGGTGATAGGGACTGGTACTTTTGGTTGTGGGAGCACCATTGTGGAAGGGGAGGATTTTATTGCTGAGAACATCACGTTCGAGAATTCCTCCCCAGAGGGTTCAGGGCAAGCAGTGGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACTCTATACTTACATTATGGCAAACATTACTTGAAAGATTGTTATATTGAAGGAAGCGTGGACTTCATTTTTGGCAATAGCACTGCTCTTTTGGAACATTGTCACATCCACTGCAAGTCTGCAGGCTTCATAACTGCACAAAGTAGAAAATCTTCTCAGGAAACAACCGGTTATGTATTCTTAAGATGTGTCATCACGGGTAATGGAGCTACTTCATATGCATATCTTGGACGACCATGGGGACCTTTTGGAAGAGTGGTCTTTGCATACACTTATATGGATCATTGTATAAAGCATGTTGGCTGGAATAACTGGGGGAAAATTGAGAATGAGAGAACTGCTTGCTTTTATGAATACAGGTGTTTTGGAGTTGGTTGCTGTCCATCCAAACGAGTAACATGGGCTAGAGAATTGATGGATGAAGAAGCAGAGCAGTTCCTTATGCATCGTTTCATTGACCCAGATGCAGATAGACCTTGGCTTGCCCAAAGGATGGCCTTGAGGATTCCATATTCTGCTTAG 951 0.4627 MAACIITVSQNGNGDYRTVQEAIDAIPLGNKRRTVIRVSPGVYKQPVYVPKTKNFITLAGLRPENTVLTWNNTATRIEHHQAARVIGTGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKHYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGATSYAYLGRPWGPFGRVVFAYTYMDHCIKHVGWNNWGKIENERTACFYEYRCFGVGCCPSKRVTWARELMDEEAEQFLMHRFIDPDADRPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1973 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Glsi11g1973 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
Glsi11g1973 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 303 - -
Glsi11g1973 316 Gene3D - 3 310 IPR012334 -
Glsi11g1973 316 FunFam Pectinesterase 2 309 - -
Glsi11g1973 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1973 Glsi-ChrGlsi11 12486044 12489774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1973 5 309 Carbohydrate Esterase AT5G47500 38.854 2.93e-72 226