Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1967 ATGGAGAGATCCTTAGGAGTCAGAAAAGGAACGTGGTGTAAAGAAGAAGATGATCTTCTAAAGGAGTCTGTTCAAAAATACGGGGAAGGAAAATGGCACCTAATTCCTCAAAGAGCAGGCTTAAAAAGATGCAGGAAAAGCTGTAGATTGAGGTGGTTGAACTATCTAAAACCGGATATTAAGAGAGGAGACTTCACTCGGGATGAAGTTGATCTCATGGTGAAGTTGCACTCACTCTTGGGAAACAGATGGTCGCTGATAGCTGCAAGGCTTCCTGGAAGAACAGCTAATGACGTGAAAAACTACTGGAACTACAAAATACGTAAGAAGGGAGCTTCTCACACACAAAGTTGTAGTGAAATAACTATGAAAACCCAGTACACGTACGAAGTAATAAAACCTCGACCGTTCACTTTCTCCGGAAACTCGTCTTGGTTGAGAACAGGGAAACCTAAAATTGCAGTTATTGAGCAGGATACTACGACTACTGATGCCGCAAATGAGGAGTGCAGTATCAAGATCGCTTCGCCACAACAACAGTTAGAGAGTTCGATGGAAGAGTGGTGGGAAAATTTGGTGGATGACTTTGAAAAGGGATCAGGCGAAGAAGGAAACAGCTCATCATCTATGTCTGATTATAATCGAGAGGGGAAGCTTGATGACCAGCTCTGGGATATTCAGGAACTTCGTTGGAATGACTTTCCTCTACGCGCTAACCTCTGCGATCTTCCATCTTAA 738 0.4322 MERSLGVRKGTWCKEEDDLLKESVQKYGEGKWHLIPQRAGLKRCRKSCRLRWLNYLKPDIKRGDFTRDEVDLMVKLHSLLGNRWSLIAARLPGRTANDVKNYWNYKIRKKGASHTQSCSEITMKTQYTYEVIKPRPFTFSGNSSWLRTGKPKIAVIEQDTTTTDAANEECSIKIASPQQQLESSMEEWWENLVDDFEKGSGEEGNSSSSMSDYNREGKLDDQLWDIQELRWNDFPLRANLCDLPS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1967 245 Gene3D - 64 130 - -
Glsi11g1967 245 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Glsi11g1967 245 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Glsi11g1967 245 CDD SANT 65 104 IPR001005 -
Glsi11g1967 245 CDD SANT 11 56 IPR001005 -
Glsi11g1967 245 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 194 - -
Glsi11g1967 245 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Glsi11g1967 245 Pfam Myb-like DNA-binding domain 62 104 IPR001005 -
Glsi11g1967 245 SMART sant 8 58 IPR001005 -
Glsi11g1967 245 SMART sant 61 109 IPR001005 -
Glsi11g1967 245 MobiDBLite consensus disorder prediction 196 215 - -
Glsi11g1967 245 FunFam Myb transcription factor 9 61 - -
Glsi11g1967 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Glsi11g1967 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Glsi11g1967 245 Gene3D - 9 61 - -
Glsi11g1967 245 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1967 Glsi-ChrGlsi11 12451983 12453073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1967 6 194 MYB Transcription Factor Family AT1G66370 48.309 6.83e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1967 Myb_DNA-binding 1.4e-14 CL0123