Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1961 ATGGGGCGATCACCATGCTGCGACAAGGTGGGCTTAAAGAAAGGACCATGGACGCCTGAGGAGGATCAGAAACTCTTAGCTTATATTGAAGAACACGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTCCAGAGGTGTGGCAAGAGCTGCAGACTGAGATGGACCAATTATCTTAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTGGTCAGCTATAGCCACACACTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAATACGCATCTTAAAAAAAGGTTAGCCAAAATGGGAATTGACCCGGTGACCCACAAGCCCAAGAATGATGCCCTTCTCTCCAGCGACGGTCAATCCAAGAGTGCAGCCAACCTTAGCCACATGGCTCAGTGGGAGAGTGCAAGGCTCGAAGCTGAAGCAAGATTGGTTAGGGAATCAAAAGTACGTTCACATTCATTGCAGCAGCATCAGCTTTGCAGCTCTGGGTTCTCGTCTTCATCTTCTGCGTCAACTTCAGCTCCAGTTCTGAATAAACCAGAGGTACCACCTATATCCTCACGTTCTCTAGATGTGCTGAAGGCTTGGAATGGAGGTTGGTTAAAATCTACCGAAGGTAATAATATTGTTGCCACTAGGAACAGTGGCGACCTTGAGTCCCCTACGTCTACCTTAACTTTCTCTGAGAACGCCCCACCAATTATGACTAGTGGACTTGGAGAAAATACAATGCCTATGATTGAGTTTGTGGGCACTTCAGGTTCTTCTGAGACGGGAATTGTGAAAGAGGAAGGTGAGCAAGAGTGGAAAGGTTATGAAAGTGCAACCCATCTGCCAGAATACAAAGATGGAATAGAGATTTCAATGTCTTTTGCGTCTAGCCTGCATGAGTTGACAATGTCCATGGAAGCTACGTGGACATCTGAACCTCTTAGGACCAATAGTGCACATGTCCCTGTTGGAGATGCCATTGCTGAGGAGGGATTCACCAATCTTTTACTTAATACTAACTCCGATGACCTGAGTTTGTCTGAGGGCGGGGGAGAGTCTAATAACTGTGATGGTAGTGGTGGCAGTGGGAGTGAATTCTATGAAGATAACAAGAACTACTGGAACAGCATTCTTAATTTAGTGAATTCCTCCCCGTCTGATTCCCCCATGTTCTGA 1227 0.4662 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQSKSAANLSHMAQWESARLEAEARLVRESKVRSHSLQQHQLCSSGFSSSSSASTSAPVLNKPEVPPISSRSLDVLKAWNGGWLKSTEGNNIVATRNSGDLESPTSTLTFSENAPPIMTSGLGENTMPMIEFVGTSGSSETGIVKEEGEQEWKGYESATHLPEYKDGIEISMSFASSLHELTMSMEATWTSEPLRTNSAHVPVGDAIAEEGFTNLLLNTNSDDLSLSEGGGESNNCDGSGGSGSEFYEDNKNYWNSILNLVNSSPSDSPMF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1961 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi11g1961 408 CDD SANT 69 112 IPR001005 -
Glsi11g1961 408 CDD SANT 16 61 IPR001005 -
Glsi11g1961 408 MobiDBLite consensus disorder prediction 232 252 - -
Glsi11g1961 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 193 - -
Glsi11g1961 408 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi11g1961 408 MobiDBLite consensus disorder prediction 181 200 - -
Glsi11g1961 408 MobiDBLite consensus disorder prediction 360 379 - -
Glsi11g1961 408 FunFam Transcription factor MYB39 68 136 - -
Glsi11g1961 408 Gene3D - 13 66 - -
Glsi11g1961 408 Gene3D - 68 141 - -
Glsi11g1961 408 MobiDBLite consensus disorder prediction 132 146 - -
Glsi11g1961 408 FunFam MYB-related transcription factor 13 66 - -
Glsi11g1961 408 MobiDBLite consensus disorder prediction 127 146 - -
Glsi11g1961 408 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi11g1961 408 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi11g1961 408 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi11g1961 408 SMART sant 66 114 IPR001005 -
Glsi11g1961 408 SMART sant 13 63 IPR001005 -
Glsi11g1961 408 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi11g1961 408 MobiDBLite consensus disorder prediction 181 196 - -
Glsi11g1961 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1961 Glsi-ChrGlsi11 12385663 12387650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1961 1 408 MYB Transcription Factor Family AT3G01140 53.286 2.63e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1961 Myb_DNA-binding 1.5e-15 CL0123