Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1948 ATGCAGACGACAACTCAAGAGCTGTGCGGCTTCAATACTGAAAGAAATCAGCTGGAAATCCCAAGAACCCAGAAGCAATCTTCACGCCTTTCCTTTGCAGAGAAGTACCCTCCTGGTTTTCTCAGAAAGGTATTGGCAGAAATTATAGGGACGTATCTATTGGTGTTTGTGGGAAGTGGTTCAGCTGCTCTTACTGCAAATGATGAACACAAAGTCTCAAGACTTGGAGCTTCACTTGCAGGAGGGTTCATTGTGGTTGTCATGATCTATGCCATCGGACACATCTCCGGCGCACACATGAATCCAGCGGTCTCCTTAGCTTTTGCCGCTTTGAGGCATTTTCCATGGAAACAGGTCCCATTTTACGTGGCAGCACAACTAATAGGAGCTATCTCTGCTGCTTTTACGCTGCGACTGCTATTGGACCCAATAAGAGAGCTTGGTACAACGTCACCCTCTGGAACAGACATTCAAGCCCTAATCATGGAGATTGTAGCAACATTCACTATGATGTTCGTCGCCTCCGCCGTGTCCACTGATGCAAAAGCTATAGGAGAGCTGGCAGGAGTTGCAGTGGGTTCCTCAGTATTCATCGCAGGCATCCTCGCTGGACCAATATCGGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAAGTGCATACTACAAGGGAATTTGGGTCTATCTGGTTGGACCAGCTACTGGGGCACTTTTAGGGGCATGGTCTTACAGCATTATTCAGGAGACAGAAAAATCGGCCTCTGCGACTTCACTGCCTCCATTTCCATTCAAGCTACGCTTGAAGAATGGTGAGACTCTGAAAGTTGGAAACAAAGATACAACACAAGTTGTGAGTGAAAATAGTGTTTAG 882 0.4717 MQTTTQELCGFNTERNQLEIPRTQKQSSRLSFAEKYPPGFLRKVLAEIIGTYLLVFVGSGSAALTANDEHKVSRLGASLAGGFIVVVMIYAIGHISGAHMNPAVSLAFAALRHFPWKQVPFYVAAQLIGAISAAFTLRLLLDPIRELGTTSPSGTDIQALIMEIVATFTMMFVASAVSTDAKAIGELAGVAVGSSVFIAGILAGPISGGSMNPARTLGPAIASAYYKGIWVYLVGPATGALLGAWSYSIIQETEKSASATSLPPFPFKLRLKNGETLKVGNKDTTQVVSENSV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1948 293 NCBIfam MIP family channel protein 46 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Glsi11g1948 293 Pfam Major intrinsic protein 40 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 SUPERFAMILY Aquaporin-like 36 254 IPR023271 -
Glsi11g1948 293 CDD MIP 42 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 Gene3D Glycerol uptake facilitator protein. 5 261 IPR023271 -
Glsi11g1948 293 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi11g1948 293 PANTHER AQUAPORIN NIP2-1 26 256 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1948 Glsi-ChrGlsi11 12277325 12279155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1948 42 255 Major Intrinsic Protein MIP AT5G37820 49.537 1.91e-69 216