Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1943 ATGGACATCACCCCCACAATCGCCAACGCCACCGCCACCAACACTACTACCAGTACAAAATCCACAGAACCTGACAGTGAAACGCCGACTCGGATCCAAGCCGCCGCCAAGCCCTTGTCCTTCTCCAATGGTGTCCTGAAGCGCCACCACCCCCATCATTATTACCACCACCTCTCCAACCAGCCCGTGGCGGTCACCTACAAAGAATGCTTGAAAAACCATGCAGCCAGCTTAGGAGGCCATGCTTTGGACGGTTGCGGTGAGTTCATGCCATCTCCCAACGCGACCGCCGACCCTAGCTCCATCAAATGCGCTGCCTGTGGCTGCCACCGGAATTTCCACCGCCGTGAACCTGAAGAGCCTATTTCCACAACCCACGTCATCGAGTACCAGCCCCACCATCGACACCACCCGCCACCGCCTCCACCGTTTCAAGCTCCTAATCGGAGCCCCAATTCAGCCTCCCCACCACCGATCTCATCCTCTTACTACCCCTCTGCACCCCACATGCTTCTGGCTCTCTCTGGTGGCTTAGCAGCTGCTCCAGAGAACGCGGCTGCTCCCTCTAACGCTTTGGCGATGCCGAGCCCGAATGCCCGGAAGCGGTTCAGGACTAAGTTCACCCAGGATCAGAAGGAAAAGATGTTCCAGTTCGCGGAGAGGGTGGGGTGGAAGATGCAGAAGAGGGATGAAGAATTGGTGCAAGAGTTCTGCAATGAGGTTGGGTTGGACAGAGGAGTGTTGAAGGTTTGGATGCACAACAACAAGAACACTTTTGCAAAGAGAGATGCCAATGGTGGTAGTAACACTGAAGAGCAAGACCCTAACGCCCACAACAGTGAAATCAATGGCAACAAAGACAACGACGACGACGGCAACACACATGATCCGAATCATCACTACACGCACGATAGGGGGGCAAACGTTGGTACTAATGGATCATCTTCTTCCTCTTGA 957 0.5465 MDITPTIANATATNTTTSTKSTEPDSETPTRIQAAAKPLSFSNGVLKRHHPHHYYHHLSNQPVAVTYKECLKNHAASLGGHALDGCGEFMPSPNATADPSSIKCAACGCHRNFHRREPEEPISTTHVIEYQPHHRHHPPPPPPFQAPNRSPNSASPPPISSSYYPSAPHMLLALSGGLAAAPENAAAPSNALAMPSPNARKRFRTKFTQDQKEKMFQFAERVGWKMQKRDEELVQEFCNEVGLDRGVLKVWMHNNKNTFAKRDANGGSNTEEQDPNAHNSEINGNKDNDDDGNTHDPNHHYTHDRGANVGTNGSSSSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1943 318 Pfam ZF-HD protein dimerisation region 65 118 IPR006456 -
Glsi11g1943 318 FunFam Zinc-finger homeodomain protein 2 187 261 - -
Glsi11g1943 318 MobiDBLite consensus disorder prediction 259 318 - -
Glsi11g1943 318 MobiDBLite consensus disorder prediction 131 161 - -
Glsi11g1943 318 ProSiteProfiles 'Homeobox' domain profile. 198 262 IPR001356 GO:0003677
Glsi11g1943 318 MobiDBLite consensus disorder prediction 283 303 - -
Glsi11g1943 318 NCBIfam homeobox domain, ZF-HD class 200 257 IPR006455 -
Glsi11g1943 318 MobiDBLite consensus disorder prediction 259 282 - -
Glsi11g1943 318 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Glsi11g1943 318 MobiDBLite consensus disorder prediction 137 154 - -
Glsi11g1943 318 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 117 IPR006456 -
Glsi11g1943 318 SUPERFAMILY Homeodomain-like 194 261 IPR009057 -
Glsi11g1943 318 Gene3D - 189 261 - -
Glsi11g1943 318 MobiDBLite consensus disorder prediction 1 30 - -
Glsi11g1943 318 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1943 Glsi-ChrGlsi11 12238601 12239557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1943 1 256 ZF-HD Transcription Factor Family AT5G15210 54.962 1.32e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi11g1943 ZF-HD_dimer 1.1e-28 No_clan