Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1941 ATGCCAGTTTATGGTTTTGATTCACTTAACCACTTGGAAAATTTGAACATAATCTTTGCAGGGGCTGAAATAGAGGGAAGTAGGGAAGGATTTGAAAGGTACTGTGACATGAGGAAGCGTCAAGTAGTTCTGAGAAGAGAGGAACCTCCAAGGAGCTCAAGCACTTCAGGTTTCACTGTTAGGAGTGTGAGATATGGAGAGTGCCAAAAAAATCATGCGGCTAATGTTGGAGGATATGCCGTGGATGGTTGCAGGGAGTTCATGGCCAGCGGGGAAGAAGGCACAAGTGCTGCTCTGACTTGTGCTGCCTGTGGCTGCCATAGGAACTTCCACAAGAGAGAGGTGGAGACCGAAGTAGTGTGTGAGTGCTCTTCACCTCCCTCCAACGGGGCTTAA 396 0.4823 MPVYGFDSLNHLENLNIIFAGAEIEGSREGFERYCDMRKRQVVLRREEPPRSSSTSGFTVRSVRYGECQKNHAANVGGYAVDGCREFMASGEEGTSAALTCAACGCHRNFHKREVETEVVCECSSPPSNGA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1941 131 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Glsi11g1941 131 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Glsi11g1941 131 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 118 - -
Glsi11g1941 131 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1941 Glsi-ChrGlsi11 12229279 12229674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1941 37 130 Zinc finger-homeobox gene family AT3G28917 77.778 6.53e-46 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi11g1941 ZF-HD_dimer 2e-30 No_clan