Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1940 ATGGGAAGGCCTCCTTGTTGTGATAAAGAAGGCGTCAAGAAAGGACCTTGGACACCTGAAGAAGATATCGTATTGGTGTCCTACATACAGGAACACGGTCCTGGCAATTGGAGGGCTGTTCCCACCAATACGGGGTTGTCACGGTGCAGTAAGAGTTGCAGACTTAGATGGACAAATTACCTGAGGCCAGGAATCAAACGCGGTAACTTCACAGACCAAGAGGAGAAGATAATAATCCATCTTCAAGCTCTTTTGGGCAACAGATGGGCTGCCATAGCTTCGTACCTTCCACAGAGAACAGATAATGACATAAAAAATTATTGGAATACCCATTTGAAAAAGAAGCTGAAGAAATTGCAAACAAACCCTGAGGACAGCAAGAGAGATGGGTTTCCAGCGTCACAGCCAATGCCCCGAGGTCAGTGGGAAAGGAGGCTCCAGACTGACATCCATACGGCCAAGAGAGCTCTTAGCGAGGCTCTGTCTCTAGAGAAGCCTTTTGGATTATCTGAATCAAATCCCTCCAATGGCTCCTTTTCTTCCACTAAACCAACTCAATCCTTAAGCTATGCGTCAAGCGCCGACAATATAGCTCGTTTGTTGAAAGCATGGAAGAAAAATCCACCAAAGGCCTCTTATAGTAACTCGGGTGTGACCCAGAATTCCTTCAACAACTTAGCAGCTGCAGGGACTGATATTGGTTGCCGCGAAGGAGCCCCAACTGAAGCAAAGGGAAGCAGCATTGAATTACCCGAGACCTTTGAATCCTTGTTTGGTTTTGAGTCTTTGGATTCTTCAAATTCTGATCAGTTTTCCCAATCTCTGTCCCCTGATCCTGAGGCCACTCTTTTCCAAGATGAAAGCAAGCCAGACAGTGGTGCAGAATTGCCCTTCTCCTTGCTTGAGAAATGGCTTCTGGACGAGGCTACATGCCAAGAGAGAGTCGGCGGCTGTGACATTACATCATTTTCAGATGCCAGGTCTTCATAG 990 0.4677 MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKIIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTNPEDSKRDGFPASQPMPRGQWERRLQTDIHTAKRALSEALSLEKPFGLSESNPSNGSFSSTKPTQSLSYASSADNIARLLKAWKKNPPKASYSNSGVTQNSFNNLAAAGTDIGCREGAPTEAKGSSIELPETFESLFGFESLDSSNSDQFSQSLSPDPEATLFQDESKPDSGAELPFSLLEKWLLDEATCQERVGGCDITSFSDARSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1940 329 MobiDBLite consensus disorder prediction 166 187 - -
Glsi11g1940 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Glsi11g1940 329 CDD SANT 16 61 IPR001005 -
Glsi11g1940 329 MobiDBLite consensus disorder prediction 264 294 - -
Glsi11g1940 329 Gene3D - 13 66 - -
Glsi11g1940 329 FunFam Transcription factor MYB30 68 126 - -
Glsi11g1940 329 Gene3D - 68 131 - -
Glsi11g1940 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi11g1940 329 SMART sant 66 114 IPR001005 -
Glsi11g1940 329 SMART sant 13 63 IPR001005 -
Glsi11g1940 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi11g1940 329 MobiDBLite consensus disorder prediction 168 187 - -
Glsi11g1940 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi11g1940 329 CDD SANT 69 111 IPR001005 -
Glsi11g1940 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi11g1940 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi11g1940 329 FunFam MYB-related transcription factor 13 66 - -
Glsi11g1940 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi11g1940 329 MobiDBLite consensus disorder prediction 264 281 - -
Glsi11g1940 329 MobiDBLite consensus disorder prediction 118 141 - -
Glsi11g1940 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1940 Glsi-ChrGlsi11 12217049 12218308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1940 1 316 MYB Transcription Factor Family AT5G62470 51.099 2.15e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g1940 Myb_DNA-binding 5.5e-15 CL0123