Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1937 ATGAACAATCCCTTGCCAGTCAACAATAGTATCAATTATTTATCTAATGAATTTGCTTCTCATCATTATTTGGGATCATTGGGTTTATTTTATTGTGTGCAAGAATGCAAAATGTCTATCGGGCAGTTCACAACTGACAAGGCTCTCCATTATAGTGATCCTCAAAGGGTGGCCCAAGTTTCGGAAGCAGACCCCCTTCTTGGTAGGCATATTATGGCTTTGGACTTGGCTCAGCTTCTTACAGATACAAATGCGAGTTTTAACATTTTGAAGTCTCTCACTCTGCAGTCGGTTCTTGAAGAGAGAGAAAGAGGGAGCAAGACAGGAAAAGAGGACATGGAGGAGAAGAATGATATGGATAAAATTGATGATGTTATGCCAGGTTTTCGGTTTCACCCCACGGACGAGGAGCTTGTTGATTTTTACCTCAAAAGAAAGATTCAGCAGAAATCTCTTCCTATTGAAATAATTAAGCAAGTGGATATTTACAAATACGATCCATGGGATCTTCCAAAAGAGCTGGCAAGTAGTGGCGAGAAAGAGTTGTACTTCTATTGTCCAAGGGACCGAAAATACAGAAACAGCGCACGCCCAAACCGAGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGACCTATATACTCCTCAGGTGGGAAGTGCATCGGTTTGAAGAAGTCCCTTGTTTTCTACAGAGGCAGAGCCTCCAAAGGAATCAAGACTGACTGGATGATGCATGAGTTTCGGCTACCGTCTCTATCAGATTCAGCTCCTCCCAAAAAACTCTCAGACAAAAGCCTCCCTCCAAGCGAGTCATGGGCAATTTGTAGGATCTTCAAGAAAACCAACTCAATGACGATGGCACAGAAAGCTTTATCTCTCCCCTGGATCACTCAGTTCCCAAAAAGCTTAGTAGCTGATACACTCACTCGGGGTGCCAACTGCAATCAGTTCAGTCCAGAAAATCTCTCTTGCACAACAGAAATAGGATCAGCCATCCACTTCTATGGTGACAAAATCTCAGCTTCAGATATTCCCTCTTATAGACCCATCAATAGCGCAGACTCCAAGTCCCCACAAATTCCTTTTTTAAACGGGGAACTTGCAGAGAGCTTCATCTTCGCCACAGTGGAAGCGTCAGGGCCTGCCAAGTGCGGAGTTGATGGTAACTCCATGCTTTTCAACCCTGACTACATAGGGTTTGAAGGGGCAGACCAGCAATTTAGCGACTTCTCAGTAAGTCTACCTGAGGATATGGAAGGGAACATTAGCACAGAAACAGGAGGAGACGAACAAGGGTGGAGGAAGAGCCCAGGTGCAGCACTGCTGAGTAATCAGTGGGAAACAGAGCGAGCCATTGGGTTTCCCTTCAGTCTGGAGCCAAATGATGCTTGGAAGTCTACTCTGCCATGGGACTCACCCGCTTGTCCTACTCACATGTCCACTGGCTATTCCACTAATAAATGCTAG 1476 0.4526 MNNPLPVNNSINYLSNEFASHHYLGSLGLFYCVQECKMSIGQFTTDKALHYSDPQRVAQVSEADPLLGRHIMALDLAQLLTDTNASFNILKSLTLQSVLEERERGSKTGKEDMEEKNDMDKIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIEIIKQVDIYKYDPWDLPKELASSGEKELYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSGGKCIGLKKSLVFYRGRASKGIKTDWMMHEFRLPSLSDSAPPKKLSDKSLPPSESWAICRIFKKTNSMTMAQKALSLPWITQFPKSLVADTLTRGANCNQFSPENLSCTTEIGSAIHFYGDKISASDIPSYRPINSADSKSPQIPFLNGELAESFIFATVEASGPAKCGVDGNSMLFNPDYIGFEGADQQFSDFSVSLPEDMEGNISTETGGDEQGWRKSPGAALLSNQWETERAIGFPFSLEPNDAWKSTLPWDSPACPTHMSTGYSTNKC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1937 491 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 124 308 - -
Glsi11g1937 491 Pfam No apical meristem (NAM) protein 127 252 IPR003441 GO:0003677|GO:0006355
Glsi11g1937 491 Gene3D NAC domain 134 288 IPR036093 GO:0003677|GO:0006355
Glsi11g1937 491 ProSiteProfiles NAC domain profile. 125 283 IPR003441 GO:0003677|GO:0006355
Glsi11g1937 491 FunFam NAC domain-containing protein 35 134 286 - -
Glsi11g1937 491 SUPERFAMILY NAC domain 124 283 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1937 Glsi-ChrGlsi11 12194080 12200412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1937 112 299 NAC Transcription Factor Family AT5G39820 66.502 1.37e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi11g1937 NAM 1.2e-35 No_clan