Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1931 ATGATGGACTCGTGGTCTCCCCAATGGCCGAGTGACCCCGTGCCTGATTTTGGAGGTTTTGTTCCGCAAGAAATGGGTCCAAGGCCCCGTGGCATCCTCTGTGCTCATGTTGCGTTTGTGGGGGTTGTAATGGCGGAAGCTACTACAGAGCCTAAAACATTGCCTGAGGCTGAGAAGAAGAAGGAGCAGAGTTTACCCTTTTACCAGCTCTTCTCTTTTGCAGACAAGTATGACTGGTTGCTCATGATCTCCGGGAGCTTAGGAGCCGTGGTTCATGGCTCTTCCATGCCTGTTTTCTTCCTTCTTTTCGGTCAAATGGTTAATGGGTTTGGCAAGAACCAGATGGATTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTGTATTTTGTGTACCTTGGTCTCGTCGTTTGCATATCATCCTACGCAGAAATTGCATGCTGGATGTATACTGGGGAGAGACAAGTGAGCACGCTAAGAAAGAAGTACTTAGAGGCAGTGCTTAAACAGGACGTTGGGTTCTTTGACACAGATGCTAGAACAGGAGATATTGTTTTTAGTGTCTCCACTGATACTCTGCTTGTTCAAGATGCTATTAGCGAGAAGGTGGGGAACTTCATACATTATCTCTCAACGTTCCTGGCGGGACTGGTGGTTGGTTTTGTGTCAGCATGGAAGTTAGCTCTTCTAAGTGTTGCAGTGATTCCGGGCATTGCTTTTGCTGGGGGGTTGTATGCTTACACCCTCACAGGCCTCACGTCCAAGAGTCGTGATTCCTACGCAAATGCTGGCATAATCGCCGAGCAGGCGATTGCTCAAGTTCGAACTGTTTACTCATATGTTGGTGAGAGCAAGGCCCTAAATTCATATTCTGATGCCATACAAAACACACTGAAGCTTGGATACAAGGCTGGAATGGCTAAAGGTTTGGGCCTGGGATGCACATATGGGATAGCTTGCATGTCCTGGGCACTAGTTTTTTGGTACGCTGGAGTGTTTATCAGGAATGGACAGACTGATGGAGGAAAGGCATTCACGGCTATTTTCTCTGCCATTGTTGGTGGCATGAGTTTGGGTCAGTCATTTTCAAATTTAGGGGCATTCAGTAAAGGCAAAGCAGCTGGATATAAATTGATGGAAATTATCAAGCAGAAACCCACCATAGTGGAAGACCCATCAGATGGGAAGAGCTTGCCTGAGATTAATGGCAATATTGAATTTAAGGATGTTACTTTCAGCTATCCATCTAGGCCAGATGTAATCATCTTTCGCAAATTTTCAATCTTTTTCCCTGCTGGGAAAACTGTTGCAGTCGTTGGTGGTAGTGGGTCTGGAAAAAGCACTGTTGTTTCCTTGGTAGAAAGGTTCTATGATCCTAATGAAGGGCTGGTTTTACTGGATAACGTGGACATCAAGACACTAAAACTAAAATGGTTACGTTATCAAATTGGGCTGGTGAATCAAGAACCTGCACTCTTTGCCACTACCATACTTGAGAATATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTAGAAGCTGCTGCTTCTGCTGCAAATGCTCATAGCTTTATTACCTTGCTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGAGTCCAATTGTCTGGCGGCCAAAAACAGAGAATTGCGATTGCCAGGGCTATGTTGAAAAATCCTAAGATCCTTCTTTTAGATGAAGCAACTAGTGCTCTTGATGCAGGCTCTGAAAGCATTGTTCAAGAAGCTCTAGACCGGCTCATGCTTGGACGTACGACTGTAGTTGTTGCCCATCGTCTATCAACTATAAGGAATGTTGACACTATCGCAGTTATACAGCAAGGGCAAGTTGTTGAGACAGGAACACACGAAGAATTGATTGCGAAGGCTGGGACCTATGCTTCACTAATTCGATTCCAAGAAATGGTTGGAAATAGAGATTTCTCCAACCCATCAACTCGCCGTACACGCTCATCGCGATTGAGCCATTCACTGTCAACAAAGTCTTTAAGCCTCCGGTCTGGAAGTTTGAGAAACTTAAGCTACCAGTACAGCACAGGAGCGGATGGTCGCATTGAGATGATTTCAAATGCTGAAACAGACAAGAAAAATCCTGCTCCTGATGGATATTTCTTCCGTCTTCTCAAGTTGAATGCCCCTGAATGGCCTTACTCAATAATGGGAGCTGTGGGGTCTGTTCTTTCTGGATTTATTGGCCCAACTTTTGCCATTGTTATGAGCAATATGATCGAGGTTTTTTACTACAGAAATTATGCTTCCATGGAGAGGAAGACTAGGGAGTATGTTTTCATATACATTGGAGCCGGTCTTTATGCCGTTGGTGCATATTTGATACAACATTACTTTTTCAGTATCATGGGAGAAAATCTCACTACAAGGGTTCGAAGAATGATGCTCACTGCAATTTTGAAGAATGAAGTAGGATGGTTCGATGAGGAGGAGCACAATTCAAGCCTTGTTACAGCTCGCCTCGCCACTGATGCTGCTGATGTGAAGTCTGCTATTGCTGAGAGGATCTCAGTAATACTGCAGAACATGACGTCTCTGCTTACTTCTTTTATAGTTGCCTTCATAGTGGAATGGAGAGTGTCCTTGCTCATCCTGGCAACCTTCCCTCTTCTTGTTCTAGCTAACTTTGCTCAGCAACTGTCTCTGAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGTATGATTGCTGGAGAGGGAGTCAGTAACATCAGAACGGTTGCGGCATTCAATGCCCAAAACAAGATCATCTCTTTGTTTTGCCATGAGCTCCGTGTCCCACAGCTACGAAGCTTCCGCCGGAGCCAAACTGCTGGACTCCTATTTGGCATCTCTCAGCTTGCCCTTTATGCCTCTGAAGCTCTCATTCTGTGGTATGGCGCACATCTTGTAAGCAAGGGCGTTTCAACCTTCTCCAAGGTCATCAAAGTTTTTGTGGTCCTGGTCATCACGGCTAATTCAGTTGCAGAAACTGTAAGCCTTGCTCCTGAGATAATCAGAGGGGGAGAAGCTGTTGGTTCTGTCTTTTCAGTTCTAGACCGTCCAACTAGGATTGATCCAGATGACCGTGATGCCGAACCAGTTGAATCCCTTCGTGGCGAAATCGAACTTAGACATGTTGATTTTGCCTACCCGTCACGACCTGATGTGATGGTCTTCAAAGATCTTAATCTTAGAATCCGTGCAGGACAGAGCCAAGCTCTTGTGGGAGCAAGTGGGTCGGGCAAGAGTTCTGTTATTGCATTGATTGAGCGTTTCTATGACCCGACTGCTGGTAAAGTCATGATAGATGGAAAGGACATTAAGAAATTGAATTTGAAATCCCTAAGGCTTAAGATTGGGTTAGTGCAGCAAGAGCCTGCCCTGTTTGCTGCAAGCATCTTCGATAACATTGCGTATGGAAAAGATGGGGCAACTGAAGCAGAGGTAATTGAAGCTGCTCGTGCAGCTAATGTGCATGCATTTGTTAGCAGTTTGCCAGAGGGTTACAAGACCCCAGTTGGTGAGAGAGGGGTTCAACTCTCTGGTGGACAAAAGCAGAGGATAGCTATTGCCAGGGCTGTCCTTAAAGACCCCACAATACTTTTACTGGACGAGGCCACTAGTGCACTCGATGCTGAATCAGAGTGTGTCCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGCCGCACCACATTGCTTGTGGCACATCGTTTATCAACCATAAGAGGGGTTGACAGCATCGGAGTTGTGCAAGATGGGCGCATCGTAGAGCAGGGAAGCCATGCTGAACTCGTCAGCCGGCCAGAGGGAGCTTATTCTAGACTCTTGCAGCTACAACATCATCATATATAA 3882 0.4575 MMDSWSPQWPSDPVPDFGGFVPQEMGPRPRGILCAHVAFVGVVMAEATTEPKTLPEAEKKKEQSLPFYQLFSFADKYDWLLMISGSLGAVVHGSSMPVFFLLFGQMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSDGKSLPEINGNIEFKDVTFSYPSRPDVIIFRKFSIFFPAGKTVAVVGGSGSGKSTVVSLVERFYDPNEGLVLLDNVDIKTLKLKWLRYQIGLVNQEPALFATTILENILYGKPDATMAEVEAAASAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMLGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNYASMERKTREYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLTAILKNEVGWFDEEEHNSSLVTARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKIISLFCHELRVPQLRSFRRSQTAGLLFGISQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRPTRIDPDDRDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIKKLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHAFVSSLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTLLVAHRLSTIRGVDSIGVVQDGRIVEQGSHAELVSRPEGAYSRLLQLQHHHI 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1931 1293 FunFam ABC transporter B family member 1 69 405 - -
Glsi11g1931 1293 ProSitePatterns ABC transporters family signature. 545 559 IPR017871 GO:0005524|GO:0016887
Glsi11g1931 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 643 IPR027417 -
Glsi11g1931 1293 SUPERFAMILY ABC transporter transmembrane region 710 1036 IPR036640 GO:0005524|GO:0016020
Glsi11g1931 1293 CDD ABC_MTABC3_MDL1_MDL2 1051 1289 - -
Glsi11g1931 1293 FunFam ABC transporter B family member 19 396 644 - -
Glsi11g1931 1293 Pfam ABC transporter 1070 1218 IPR003439 GO:0005524
Glsi11g1931 1293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 371 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1931 1293 Gene3D - 404 667 IPR027417 -
Glsi11g1931 1293 Gene3D - 1049 1290 IPR027417 -
Glsi11g1931 1293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 642 IPR003439 GO:0005524
Glsi11g1931 1293 FunFam ABC transporter B family member 1 708 1017 - -
Glsi11g1931 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1041 1289 IPR027417 -
Glsi11g1931 1293 PANTHER ABC TRANSPORTER B FAMILY 48 741 IPR039421 -
Glsi11g1931 1293 FunFam ABC transporter B family member 19 1041 1290 - -
Glsi11g1931 1293 CDD ABC_6TM_Pgp_ABCB1_D2_like 718 1034 - -
Glsi11g1931 1293 SMART AAA_5 433 619 IPR003593 GO:0016887
Glsi11g1931 1293 SMART AAA_5 1078 1264 IPR003593 GO:0016887
Glsi11g1931 1293 Pfam ABC transporter 427 573 IPR003439 GO:0005524
Glsi11g1931 1293 Gene3D ABC transporter type 1, transmembrane domain 129 1022 IPR036640 GO:0005524|GO:0016020
Glsi11g1931 1293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 729 1016 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1931 1293 CDD ABC_MTABC3_MDL1_MDL2 406 643 - -
Glsi11g1931 1293 Pfam ABC transporter transmembrane region 729 1000 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1931 1293 Pfam ABC transporter transmembrane region 87 356 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi11g1931 1293 CDD ABC_6TM_Pgp_ABCB1_D1_like 82 379 - -
Glsi11g1931 1293 Gene3D ABC transporter type 1, transmembrane domain 1023 1048 IPR036640 GO:0005524|GO:0016020
Glsi11g1931 1293 ProSitePatterns ABC transporters family signature. 1190 1204 IPR017871 GO:0005524|GO:0016887
Glsi11g1931 1293 SUPERFAMILY ABC transporter transmembrane region 70 393 IPR036640 GO:0005524|GO:0016020
Glsi11g1931 1293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1053 1287 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1931 Glsi-ChrGlsi11 12139355 12151207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1931 47 1289 Calmodulin-binding Proteins AT2G36910 53.877 0.0 1354