Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1930 ATGTCTAGCAGAAGGTCCAGGCAGCAATCAGCGTCTACAAGGATCTCCGATGACCAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATGCGCGATAGGCGCTCTAACAAGGTATCAGCATCTAAGGTCCTACAGGAGACCTGCAACTACATCAAAAACTTGAACAGAGAGGTGGATGACTTAAGCGAGCGACTGTCTCAGTTATTGTCCACAATTGATGCTGATAGTGCAGAGGCTTCCATCATTAGGAGCCTAATTAACCAATAA 279 0.4552 MSSRRSRQQSASTRISDDQIIELVSKLRQLVPEMRDRRSNKVSASKVLQETCNYIKNLNREVDDLSERLSQLLSTIDADSAEASIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1930 92 Coils Coil 48 75 - -
Glsi11g1930 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Glsi11g1930 92 Gene3D - 2 88 IPR036638 GO:0046983
Glsi11g1930 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Glsi11g1930 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Glsi11g1930 92 FunFam Transcription factor ILI6 5 87 - -
Glsi11g1930 92 CDD bHLH_AtPRE_like 9 75 - -
Glsi11g1930 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1930 Glsi-ChrGlsi11 12129789 12130815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1930 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 3.45e-35 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g1930 HLH 3.2e-05 No_clan