Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1927 ATGAAGATCATCACCACCGCTCAGTCTCACCGAACTCTCTCAACGCCTTCCCCCCTCTACCGCCACAACACTTTCAAGGTTATACTCTCTCACTCTCTCGATAAAAGAATTCCAAGTGATGGATTTAATTTACTGTTTGTTTGGGATGACGCAGGGGGTGCAGCTTTCATGGGGAAGCGGTCGATGTCGTTTTCAGGTATGGAAAACAAGTGGGAGGAAGTGAATGGAGATGACGAAATGTCCGATGATGGATCCCAGATTGGGGAGAAGAAGAAGAGGCTGAACACGGAACAGGTGAAGGCCCTTGAGAAGAGCTTTGAGTGGGGGAACAAGCTTGAACCAGAAAGGAAAATGAAGCTGGCTAAGGATTTGGGTCTGCAGCCAAGACAGATCGCCATATGGTTTCAGAATAGGAGAGCAAGATGGAAAACCAAGCAACTCGAAAAACAATATGATAGTCTCAAGAAACAGTTTGAAGCAATCAAGGCTGACAACAATGCCCTTAAGCTTCAGAACCAGAAACTACATGCAGAGTTAGAAGCTCTGAAAGGTAGCGATTGCTGGGAAGCCGGAGTAATCAGCCTAAAGAAAGAAACGGAGGGTTCTTGGAGCAATGGAAGTGATAGCAGTTCAGACATTAATTTGGATCTTACAAGAACACCAGTTATGAACAGTCCTGTTCCTGTATCTTCTCAGAATGGTAAAAGCACGCTACCCTCTTCCCTAAAGGCCACTACCCTAACCCAACTTCTCCAGTTCTCATCAAGGTCCGACGTCCTCCAAGATGAAAACTTCTGCAACATGATTCCCAGCATTGATGAGCAGCAGAACTATTGGACCTGGCCTGAGCACCGCCAATTTCATTAA 867 0.4602 MKIITTAQSHRTLSTPSPLYRHNTFKVILSHSLDKRIPSDGFNLLFVWDDAGGAAFMGKRSMSFSGMENKWEEVNGDDEMSDDGSQIGEKKKRLNTEQVKALEKSFEWGNKLEPERKMKLAKDLGLQPRQIAIWFQNRRARWKTKQLEKQYDSLKKQFEAIKADNNALKLQNQKLHAELEALKGSDCWEAGVISLKKETEGSWSNGSDSSSDINLDLTRTPVMNSPVPVSSQNGKSTLPSSLKATTLTQLLQFSSRSDVLQDENFCNMIPSIDEQQNYWTWPEHRQFH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1927 288 Pfam Homeobox associated leucine zipper 145 184 IPR003106 GO:0006355|GO:0043565
Glsi11g1927 288 FunFam Homeobox-leucine zipper protein ATHB-13 82 149 - -
Glsi11g1927 288 CDD homeodomain 90 146 IPR001356 GO:0003677
Glsi11g1927 288 Gene3D - 82 155 - -
Glsi11g1927 288 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Glsi11g1927 288 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Glsi11g1927 288 SMART HOX_1 88 149 IPR001356 GO:0003677
Glsi11g1927 288 SUPERFAMILY Homeodomain-like 76 147 IPR009057 -
Glsi11g1927 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 60 259 IPR045224 GO:0003700
Glsi11g1927 288 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Glsi11g1927 288 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Glsi11g1927 288 Coils Coil 137 185 - -
Glsi11g1927 288 Pfam Homeodomain 90 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1927 Glsi-ChrGlsi11 12106595 12108182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1927 49 288 Homeobox Transcription Factor Family AT1G69780 50.394 1.02e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi11g1927 Homeodomain 4.6e-15 CL0123