Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1923 ATGGGTTATCTGAGTAGAGCTTCAAAGACCCTAAGACAATCTAATTACTTGTCCCTGTTGTTTAGTTCCTCCCCATTGTCCTCGATATTTGAAGGCAAGTCATTAAACAGTAGACTAACTTATCATCGCTTTGCTCTGAGCCGTGCATTGTTCTGTTCTTTACCACGCCACAACAGCAAAGAAAATAATCGCACAGATTTGAGTCAATATCCTCCAGAGCTAATTAGAAACTTCTCGATAATTGCACATATAGATCATGGCAAGTCCACTCTTGCTGATCGGCTTCTAGAGCTCACTGGGACTATTAAGAAAGGCCATGGTCAGCCTCAGTATCTCGACAAACTTCAGGTAGAAAGAGAAAGGGGAATCACAGTTAAAGCCCAGACAGCAACAATGTTCTATAAGCACAGCATTCAGAATGCCAACAATAGTGATGGGCAAGATCACCCTAGCTTCCTGCTAAATCTTATTGACACCCCCGGACATGTGGATTTTAGTTATGAAGTATCGAGATCTCTGGCAGCTTGTCAGGGTGTTCTTTTGGTCGTTGATGCTGCTCAAGGAGTCCAAGCACAAACTGTTGCTAATTTTTATCTTGCTTTTGAGTCTAACCTAACAATTATACCTGTCATAAACAAAATAGACCAGCCAACTGCCGATCCTGATGGTGTCAAAGCGCAACTAAAATCAATGTTTGATCTCGACCCACGTGATGCACTTTTAACATCTGCTAAAACAGGACAGGGTCTTGAGCAAGTCCTTCCTGCTGTCATACAGCGCATACCTCCTCCTCCTGGGAAGAGTGATTCTCCTCTACGCATGTTTTTGCTGGATTCGTATTATGATGAATACAAAGGGGTAATATGCCATGTTGCTGTTGTTGATGGTGCCCTGCGCAAGGGGGATAAAATTTCATCTGCAGCAACTGGGCAATCTTATGAAGCTTTGGATGTAGGCATCATGCATCCTGAACTCACCTCTACTGGAACCCTGCTTACTGGACAAGTAGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCACGTGTTGGAGATACACTTTTCCATACCCGCAGTGCTGTGGAGGCCCTTCCAGGCTTCAAGCCAGCGAAACATATGGTATTCTCTGGTCTTTATCCAGCTGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGACTGACATGCAATGATGCCAGTGTCTCCATTACTAAAGAAAGTAGCACAGCTCTAGGTCTGGGGTTCAGGTGTGGTTTCTTAGGCTTACTACACATGGATGTTTTTCATCAGCGACTTGAACAGGAGTATGGAGCTCATGTTATCTCAACTGTTCCTACTGTGCCATATATATTTGAGTATTCTGATGGAAGTAAATTGCAAGTTGAGAATCCTGCTGCATTACCCTCTAATCCCAAGCAACGAGTGACAGCCTGTTGGGAACCTACAGTAATGGCTACAATTATCATTCCTAGTCAGTATGTGGGATCTATTATTACCCTTTGCTCTGAGCGAAGAGGCCAGCAATTGGAGTACTCTTTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGGGAAATTGTTGTCGACTTTTACAATGAATTGAAGAGTATAACGTCAGGCTATGCTTCATTCGATTATGAAGATGCAGATTATCAACAATCTGATCTGGTGAAACTTGATATTCTGTTGAATGGACAACCAGTTGATGCGATGGCAACCATTGTTCATAACTTGAAAGCTTACCGTGTAGGGCGTGAATTGGTAGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTTGAGATAACCATACAAGCTGCTATTGGATCAAAAGTTATAGCAAGGGAGACGATTTCAGCAATGAGAAAAAATGTTCTTGCGAAGTGTTACGGCGGTGATGTTACTCGAAAGAGGAAACTATTAGAGAAGCAAAAAGAAGGAAAGAAGCGAATGAAACGTGTTGGTTCTGTTGATATACCACAAGAGGCATTCCATGAACTATTGAAGGTTTCGTAG 2037 0.4266 MGYLSRASKTLRQSNYLSLLFSSSPLSSIFEGKSLNSRLTYHRFALSRALFCSLPRHNSKENNRTDLSQYPPELIRNFSIIAHIDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSIQNANNSDGQDHPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIIPVINKIDQPTADPDGVKAQLKSMFDLDPRDALLTSAKTGQGLEQVLPAVIQRIPPPPGKSDSPLRMFLLDSYYDEYKGVICHVAVVDGALRKGDKISSAATGQSYEALDVGIMHPELTSTGTLLTGQVGYVVSGMRSTKEARVGDTLFHTRSAVEALPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKESSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLQVENPAALPSNPKQRVTACWEPTVMATIIIPSQYVGSIITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMATIVHNLKAYRVGRELVEKLKKVIDRQMFEITIQAAIGSKVIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1923 678 NCBIfam small GTP-binding protein domain 78 253 IPR005225 GO:0005525
Glsi11g1923 678 CDD EF4_III 373 448 - -
Glsi11g1923 678 Gene3D Translation factors 267 365 - -
Glsi11g1923 678 CDD LepA 76 264 - -
Glsi11g1923 678 Gene3D - 562 636 IPR038363 -
Glsi11g1923 678 Hamap Elongation factor 4 [lepA]. 71 678 IPR006297 GO:0005525
Glsi11g1923 678 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Glsi11g1923 678 PRINTS GTP-binding elongation factor signature 77 90 IPR000795 GO:0003924|GO:0005525
Glsi11g1923 678 PRINTS GTP-binding elongation factor signature 120 128 IPR000795 GO:0003924|GO:0005525
Glsi11g1923 678 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Glsi11g1923 678 FunFam Translation factor GUF1, mitochondrial 366 447 - -
Glsi11g1923 678 Pfam Elongation factor G C-terminus 483 568 IPR000640 -
Glsi11g1923 678 FunFam Translation factor GUF1, mitochondrial 448 560 - -
Glsi11g1923 678 Pfam GTP-binding protein LepA C-terminus 570 676 IPR013842 -
Glsi11g1923 678 CDD lepA_C 483 562 IPR035654 -
Glsi11g1923 678 Pfam Elongation factor Tu GTP binding domain 75 262 IPR000795 GO:0003924|GO:0005525
Glsi11g1923 678 FunFam Elongation factor 4 72 266 - -
Glsi11g1923 678 FunFam Translation factor GUF1, mitochondrial 562 636 - -
Glsi11g1923 678 Gene3D - 73 266 IPR027417 -
Glsi11g1923 678 PANTHER TRANSLATION FACTOR GUF1-RELATED 51 677 IPR006297 GO:0005525
Glsi11g1923 678 SUPERFAMILY EF-G C-terminal domain-like 482 576 IPR035647 -
Glsi11g1923 678 NCBIfam translation elongation factor 4 74 677 IPR006297 GO:0005525
Glsi11g1923 678 Gene3D - 448 561 - -
Glsi11g1923 678 CDD EF4_II 272 357 - -
Glsi11g1923 678 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 73 265 IPR000795 GO:0003924|GO:0005525
Glsi11g1923 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 302 IPR027417 -
Glsi11g1923 678 SUPERFAMILY EF-G C-terminal domain-like 374 451 IPR035647 -
Glsi11g1923 678 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 113 128 IPR031157 -
Glsi11g1923 678 FunFam Translation factor GUF1, mitochondrial 267 365 - -
Glsi11g1923 678 Gene3D Elongation Factor G (Translational Gtpase), domain 3 366 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1923 Glsi-ChrGlsi11 12087091 12091073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1923 75 216 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 2.57e-24 106