Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1918 ATGTGCATGGCAGGTGAGTTCCAAGGAGCTCAGGGTGTCAAGAGATGCAGAAAAGAATTGCCTGCACAAAATTGTGATGATAATCAAGGTCAGAGGCTGCAGCAGCAGCAGTTGTCACAGCAACAAGTTGATCAAAATGCTATTATCAACACTGTGAAAAGAAGTTCAAGATTTCGTGGGGTCAGCAGACACAGATGGACCGGTCGATTTGAAGCTCACTTGTGGGACAAGCTCTCTTGGAATGTAACACAGAAGAAGAAAGGGAAGCAAGGGGCTTACGATGAAGAAGAATCTGCAGCCAGAGCACACGATTTAGCTGCACTTAAATACTGGGGAACATCAACTTTCACCAACTTTCCAATATCAGATTACGAGAAAGAGATAGAGATGATGCGGACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGAAGGAAGAGCAGTGGCTTTTCAAGAGGCGTATCAAAGTATAGGGGTGTCGCAAGACTGATTGCTTTCGGTTTTGGAATAGCACACAATGATCCACATTGTTGCATAGCTTTCAGGCTTCTTCGCACCGGAATGTAA 567 0.4444 MCMAGEFQGAQGVKRCRKELPAQNCDDNQGQRLQQQQLSQQQVDQNAIINTVKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAHDLAALKYWGTSTFTNFPISDYEKEIEMMRTMTKEEYLATLRRKSSGFSRGVSKYRGVARLIAFGFGIAHNDPHCCIAFRLLRTGM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1918 188 Pfam AP2 domain 56 112 IPR001471 GO:0003700|GO:0006355
Glsi11g1918 188 SMART rav1_2 57 126 IPR001471 GO:0003700|GO:0006355
Glsi11g1918 188 SUPERFAMILY DNA-binding domain 56 122 IPR016177 GO:0003677
Glsi11g1918 188 CDD AP2 56 122 IPR001471 GO:0003700|GO:0006355
Glsi11g1918 188 Gene3D AP2/ERF domain 56 122 IPR036955 GO:0003700|GO:0006355
Glsi11g1918 188 ProSiteProfiles AP2/ERF domain profile. 57 120 IPR001471 GO:0003700|GO:0006355
Glsi11g1918 188 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 31 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1918 Glsi-ChrGlsi11 12054523 12055989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1918 53 162 AP2-EREBP Transcription Factor Family AT5G17430 66.372 5.45e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g1918 AP2 9.1e-10 CL0081