Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1916 ATGGCAGGAAGTGGAACCAAGGTTACCTTAATGTTCTTGGCTGCCTTGGCCATTACTATTCCATGCCTTGAGGCTAGAATTGGTGAGTTTGACGACTATCTCCGGAAACAAGCCGCGGAAGCCCGCAGAGCAGCTCGTGAGGCCTACGAGCCCTTCCCTTCTAATGTTACTTCCCACTTCAATTCACAAGTTCACCTGGCAATGGATGGGAGCAACAGCACAAGGAGGGGCCTGGGGGTTAAGGATTCGAAAAAATACAAAGGACCGTGCGTGGCCTACAACCCAATTGACCGTTGCTGGAGGTGCAGGCCTGACTGGGCAGACGATCGCTTTAGGTTAGCCAAATGTGCATTGGGTTTCGGCAGAAAGACCACCGGAGGGCTTGGGGGTCGCATCTACGTGGTGACCGACAAATCGGATGATGACTTGATCAACCCAAAACCCGGAACTCTGAGGCACGCCGTCATTCAGAAGGAGCCACTCTGGATCATATTCCAACGCAACATGATCATCAAATTGCGACAGGAGCTGCTGGTTGCATCCCACAAGACCATCGATGGTCGGGGTGTCAATGTTCAGATTAAGGGTGGCGGCGGCATCACTTTGCAGTTTGTGAAGAATGTGATCATCCACGGCATTCGCATTCGCGAGATCAAGTCCTTGGCCGGTGGTCTTATTAGGGACTCCGTGGACCATGTCGGGTTCAGAACCAGAAGTGATGGGGATGCCATCGGCCTGTTCGGAGCCACAAACGTTTGGATTGATCACGTGTCGCTGTCGGAAACAGAAGATGGGCTGATCGACGTCATTCAAGGATCAACAGGAGTGACAATCTCAAACTGCCACTTGGCGAAACACAACGATGTGATGCTTTTCGGAGCAAATGATATGTACACAGGGGACAGGGTACAGCAGGTAACAGTGGCGTTCAACCACTTCGGGGCGGGACTGATACAGAGGATGCCGAGGTGCAGACATGGGTTCTTCCACGTGGTCAACAATGACTACACACACTGGATAATGTACGCCATAGGAGGAAGCTCAGGGCCAACAATCCTGAGCCAGGGGAACCGCTTCATTGCTCCAGACAACCAAGCTGCCAAGGAAGTAACACACAGAGACTACGCGCCAGAAGCGGAGTGGGATAAATGGCAGTGGACATCGGAGTTGGACGTGATGATGAATGGGGCCTATTTTGTTCCGTCTGGGGCACCCATAAAGAAGTTCCCACCCGGAGGCAACGGTGCCGAAATCAGACCCAGACCTGGAACCCAAGTCAGCAAGCTTACCAAGTTTTCTGGTCCGCTCAATTGCAAGGTGGGCAAAGTTTGTTAG 1335 0.5243 MAGSGTKVTLMFLAALAITIPCLEARIGEFDDYLRKQAAEARRAAREAYEPFPSNVTSHFNSQVHLAMDGSNSTRRGLGVKDSKKYKGPCVAYNPIDRCWRCRPDWADDRFRLAKCALGFGRKTTGGLGGRIYVVTDKSDDDLINPKPGTLRHAVIQKEPLWIIFQRNMIIKLRQELLVASHKTIDGRGVNVQIKGGGGITLQFVKNVIIHGIRIREIKSLAGGLIRDSVDHVGFRTRSDGDAIGLFGATNVWIDHVSLSETEDGLIDVIQGSTGVTISNCHLAKHNDVMLFGANDMYTGDRVQQVTVAFNHFGAGLIQRMPRCRHGFFHVVNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNQAAKEVTHRDYAPEAEWDKWQWTSELDVMMNGAYFVPSGAPIKKFPPGGNGAEIRPRPGTQVSKLTKFSGPLNCKVGKVC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1916 444 SMART amb_all 168 365 IPR002022 -
Glsi11g1916 444 Gene3D - 93 437 IPR012334 -
Glsi11g1916 444 SUPERFAMILY Pectin lyase-like 74 409 IPR011050 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Glsi11g1916 444 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Glsi11g1916 444 PANTHER PECTATE LYASE 18-RELATED 41 442 IPR045032 GO:0030570
Glsi11g1916 444 Pfam Pectate lyase 174 359 IPR002022 -
Glsi11g1916 444 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1916 Glsi-ChrGlsi11 12033719 12035151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1916 5 444 Polysaccharide Lyase AT1G14420 56.763 0.0 517