Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1912 ATGGGAAGAATCCTACAACCAAAGCGAGCTTTTGGCTTCTTTGGAAGAAAAAAATTTGGAACAACTAACATCTTCCAACAAACAAAAAAATTTCTTCTCTGCATTTTCTATTATTGTTCCAACAACCATTCACCTAAATTTGCCCGAAGTTTTCAGCTTAGAAGGAAAGTAGGTTTACCTAGCATTGCATGCGAGTCCCCACATATTCGTAAGGAAAATAGAGACAATCGTGCTCTTAAAGCTGCCACTTCGAGATTTAGGACAGAGAAAAAGAAAATCCTCGAACAGAGCAGAAGAAACCTCCGTATAGTGAGAGTACCTAAACATTCGGTTTTGGTTGGGATGGCTGACAAAGACGAAGCCTTGAAGGCTGTGTTGAAGGAAGTTGTGGATTTGGAAAACGTACCGCTTGAGGAGGTTTTTCAGACCCTGAGGTGTGATACAAATGGGCTCACAACAGAAGCTGCTCGCGAGAGGTTGGCCATCTTTGGGTACAACAAACTCGAGGAGAAGAAGGAGAGCAAATTTTTGAAGTTCTTAGGATTCATGTGGAATCCTCTCTCGTGGGTCATGGAAGCTGCAGCAATTATGGCCATTGCTTTAGCCAACGGAGGAGGGAAACCTCCTGATTGGCAAGACTTTGTTGGAATTATCACGCTCCTACTTATCAATTCGACAATAAGTTTTATAGAGGAGAACAATGCAGGCAATGCTGCTGCTGCTCTCATGGCTCGTCTAGCACCCAAAGCTAAGGTCCTTCGAGATGGGAAATGGATTGAGGAGGATGCAAGTATTCTTGTTCCTGGTGACATAATTAGTGTGAAGCTAGGAGATATTATTCCAGCCGATTCTCGTCTCCTTAATGGTGATCCATTGAAGATTGATCAGTCTGCCCTCACAGGTGAATCCCTTCCTGTGACGAAAGGACCTGGTGATAGTGTTTATTCAGGCTCTACATGCAAACAGGGGGAGATAGAAGCAGTTGTTATTGCCACAGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTTGTGGATACCACAAATCAAGTGGGGCATTTTCAAAAGGTTTTGACTGCTATTGGGAATTTTTGTATATGTTCGATTGTGTTGGGAATGATAGTAGAGATCACTGTCATGTACCCTATTCAACATCGGAAGTATCGACCTGGAATTGACAATCTGCTAGTGCTTCTTATTGGAGGAATTCCCATAGCCATGCCTACTGTTTTGTCTGTGACAATGGCAATTGGATCACATCGCTTAGCTCAGCAGGGAGCTATTACTAAAAGAATGACAGCCATAGAAGAAATGGCAGGCATGGATGTATTGTGTAGTGATAAAACGGGAACCTTAACATTGAATAAGCTGACAGTTGACAAGAATCTTATTGAGGTTTTTGCTAAAGGAGTTGACTCAGATACTGTTGTTCTCATGGCCGCTCGGGCCTCCAGAGTGGAAAACCAAGATGCAATAGATGCTGCTATTGTAGGGATGCTGGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTTCCATTTAATCCAACTGATAAGCGGACAGCTCTAACTTACTTAGACAGTGAAGGTAAAATGCATCGTGTCAGCAAAGGTGCACCAGAGCAGATTTTGAACCTTGCACACAATAAATCAGAGATAGAACGCAGAGTTCATGCTATCATCGATAAGTTTGCAGAAAGAGGATTAAGATCTCTTGCAGTAGCCTACCAGGAAGTTCCTGATGGAAGAAAAGAGAGCCAAGGAGGGCCTTGGCAATTTATTGGCCTCATGCCTCTTTTTGACCCACCTAGGCATGACAGTGCGGAGACAATACGAAGGGCATTGAATCTTGGAGTGAATGTTAAGATGATAACAGGTGATCAACTAGCTATAGGAAAGGAAACAGGACGCCGTCTGGGGATGGGAACCAACATGTACCCTTCATCAGCCTTATTGGGACAAAACAAGGATGAAGCAATTGCTGCTTTTCCAGTTGATGAACTGATTGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCAGAGCACAAATATGAAATTGTGAAGCGTTTACAAGCTAGGAAACATATATGTGGAATGACTGGTGATGGGGTTAATGATGCCCCGGCACTTAAAAAAGCAGATATTGGAATAGCTGTTGCTGATGCAACTGATGCAGCTCGTAGTGCCTCTGACATTGTTCTGACAGAACCAGGTCTTAGCGTTATCATAAGTGCTGTACTGACCAGTCGAGCAATATTCCAAAGGATGAAGAATTACACAATATATGCGGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCAATTTGACTTTCCACCATTCATGGTTCTGATTATTGCTATCCTTAATGATGGTACCATTATGACGATATCAAAGGACAGAGTGAAACCATCTCCACATCCAGATAGCTGGAAGCTGGCAGAGATATTTGCTACTGGAATAATTCTTGGTGGTTATTTGGCGATGATGACAGTCATTTTCTTTTGGGCAGCATATAAAACAGATTTCTTCCCTCGTACATTTGGGGTCTCAAGCCTTCAGAAAAAGGATGAGGATGACTTTAGAAAGCTTGCCTCAGCAATATACCTGCAAGTTAGTACAATTAGTCAAGCCCTGATATTTGTTACACGGGCCCGGAGTTGGTCTTTTATTGAGCGTCCGGGTTTGTTGCTTGTAGCAGCTTTTGTTATTGCCCAGCTGATAGCTACACTGATTGCTGTCTATGCAAATTGGAGTTTTGCTGCAATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTATATAACCTCATCTTCTATTTCCCACTTGATTTTATCAAGTTCGTAATTCGATATGCCTTGAGTGGTAGGGCTTGGGATCTTGTTATTGAACAAAGGATCGCCTTTACAAGGAAAAAGGACTTTGGAAAGGAAGAACGTGAACTTAAATGGGCACATGCACAGAGGACCCTTCATGGGCTTCACCCACCTGATACCAAGATGTTCAGTGAACGTACTACTTATGCAGAACTCAATCAGATGGCTGAAGAGGCTAAAAGACGAGCAGAGATTGCGAGACTGAGAGAATTGCATACACTAAAAGGGCATGTTGAGTCGGTGGTTAGACTGAAGGGCCTTGACATCGACACAATTCAGCAATCATACACTGTCTGA 3213 0.4311 MGRILQPKRAFGFFGRKKFGTTNIFQQTKKFLLCIFYYCSNNHSPKFARSFQLRRKVGLPSIACESPHIRKENRDNRALKAATSRFRTEKKKILEQSRRNLRIVRVPKHSVLVGMADKDEALKAVLKEVVDLENVPLEEVFQTLRCDTNGLTTEAARERLAIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASILVPGDIISVKLGDIIPADSRLLNGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIVLGMIVEITVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDSDTVVLMAARASRVENQDAIDAAIVGMLGDPKEARAGIQEVHFLPFNPTDKRTALTYLDSEGKMHRVSKGAPEQILNLAHNKSEIERRVHAIIDKFAERGLRSLAVAYQEVPDGRKESQGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDEAIAAFPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPHPDSWKLAEIFATGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRARSWSFIERPGLLLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDFIKFVIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPDTKMFSERTTYAELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQSYTV 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1912 1070 Gene3D - 210 935 - -
Glsi11g1912 1070 CDD P-type_ATPase_H 150 961 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi11g1912 1070 FunFam ATPase 4 plasma membrane-type 689 935 - -
Glsi11g1912 1070 PANTHER CALCIUM-TRANSPORTING ATPASE 133 1003 - -
Glsi11g1912 1070 SFLD C1.7: P-type atpase like 427 755 - -
Glsi11g1912 1070 SUPERFAMILY Calcium ATPase, transduction domain A 248 345 IPR008250 -
Glsi11g1912 1070 Gene3D - 457 604 IPR023299 GO:0000166
Glsi11g1912 1070 FunFam Plasma membrane ATPase 457 604 - -
Glsi11g1912 1070 Pfam Cation transporter/ATPase, N-terminus 134 197 IPR004014 -
Glsi11g1912 1070 Gene3D - 1019 1070 - -
Glsi11g1912 1070 Gene3D - 248 332 - -
Glsi11g1912 1070 PRINTS H+-transporting ATPase (proton pump) signature 676 692 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 PRINTS H+-transporting ATPase (proton pump) signature 735 760 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 PRINTS H+-transporting ATPase (proton pump) signature 704 720 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 PRINTS H+-transporting ATPase (proton pump) signature 561 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 PRINTS H+-transporting ATPase (proton pump) signature 880 901 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 Pfam E1-E2 ATPase 246 425 - -
Glsi11g1912 1070 FunFam Plasma membrane ATPase 248 332 - -
Glsi11g1912 1070 NCBIfam HAD-IC family P-type ATPase 217 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 NCBIfam HAD-IC family P-type ATPase 679 793 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1912 1070 SUPERFAMILY HAD-like 441 751 IPR036412 -
Glsi11g1912 1070 Pfam haloacid dehalogenase-like hydrolase 441 718 - -
Glsi11g1912 1070 NCBIfam plasma-membrane proton-efflux P-type ATPase 150 926 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi11g1912 1070 Gene3D - 442 741 IPR023214 -
Glsi11g1912 1070 PRINTS P-type cation-transporting ATPase superfamily signature 727 739 - -
Glsi11g1912 1070 PRINTS P-type cation-transporting ATPase superfamily signature 295 309 - -
Glsi11g1912 1070 PRINTS P-type cation-transporting ATPase superfamily signature 621 631 - -
Glsi11g1912 1070 PRINTS P-type cation-transporting ATPase superfamily signature 599 610 - -
Glsi11g1912 1070 PRINTS P-type cation-transporting ATPase superfamily signature 445 459 - -
Glsi11g1912 1070 PRINTS P-type cation-transporting ATPase superfamily signature 704 723 - -
Glsi11g1912 1070 FunFam Plasma membrane ATPase 598 752 - -
Glsi11g1912 1070 SMART Cation_ATPase_N_a_2 131 203 IPR004014 -
Glsi11g1912 1070 Coils Coil 1021 1041 - -
Glsi11g1912 1070 SUPERFAMILY Calcium ATPase, transmembrane domain M 131 967 IPR023298 -
Glsi11g1912 1070 SFLD p-type atpase 427 755 IPR044492 -
Glsi11g1912 1070 ProSitePatterns E1-E2 ATPases phosphorylation site. 447 453 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1912 Glsi-ChrGlsi11 12002573 12017219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1912 115 1070 Primary Pumps ATPases AT5G62670 89.749 0.0 1751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1912 11 12002573 12017219 Glsi11g1912 11 12002573 12017219 ECH