Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1895 ATGGCAAAATGTTCGATGCATCTAAGGAATTTCTCCCTACTTCTATTACTCTGTAGCTTGGCGAGCATCTGGGGTTTTGCTGCTTCGCAGGCTGAAGATGACGTGAAATGCCTCAAAGGCATCAAAGACTCTCTCAGTGACCCTCAGGGGAGGCTTGCATCTTGGCGTTTCGATAATAACACCGTCGGTTTCATCTGCGAGTTCTTCGGGGTGGTGTGCTGGAACCCCCAGGAGAATCGGGTCCTCAATCTGGAGCTCCGGGATATGAAACTCTCAGGTCGGGTGCCAGAGTCGTTGAAGTACTGTGGTAAGAGTCTGCAAAAACTGGATCTTGGGTCCAACGACGTTTCCGGTACGATCCCTCCTCAAATATGTAGTTGGTTGCCATTTTTAGTAACGCTGGACTTGTCCGATAATCATCTTTCTGGGCCTATACCTCCTACTCTTGTGAATTGCTCTTATTTGAATACGTTAATTCTTTCCAATAATGAGCTTTTGGGTTCTATCCCCTATGAATTTGCGAGTTTGAGTAGGCTTAAGACGTTTTCTGTTGCTAATAATCATCTTACTGGAACGATTCCTTCGTTTTTAAGTGAATCTGGCAAGGAAAACTTTGCTGGGAATAGTGGGCTTTGTGGGGGTCCTCTTGGATCCAAGTGTGGTGGGTTGAGTAGGAAGAATCTTGCTATTATTATGGCTGCTGGGTTGTTTGGAGCGGTTGTTTCTTTGTTATTCGGTTTTGGCTTGTGGTGGTGGTATCGTTTGCGGTTGGCTGGGAATAAGAGAGGATACGGGATTGGGATGGATGATGATTGGGCTGTGAGGTTTAGGGGTCATAAACTCGTTCAAGTTACATTGTTTCAGAAACCCCTTGTGAAGGTTAAATTAGGCGATTTGATGATGGCTACCAATAATTTCAGTGCAAAAAGTATTCTTATTTCCACAAGAACAGGGACCACTTATAAAGCAGATCTTCCTGATGGCTCAACACTTGCAGTCAAGTGGCTTAACACCTGTCAGATTGGAGAGAAGCTGTTTCGCATGGAGATGAATAGGCTAGGCCAAGTCAGGCACCCGAATTTGGCACTCCTTTTGGGGTTCTGCGTAGTAGAAGAGGAAAAGCTTCTGGTCTATAAGCACATGTCAAATGGAACTCTGTCTTCCTTGTTGCATAAAAACGGTAGTGCATTGGATTGGCCAAATAGATTCAGGATAGGATTGGGCTCAGCTAGGGGTCTTGCTTATTTGCATCATGGGTGCCATCCTCCGATTATACACCAAAACATTTGTTCCAATGTGATTGTTGTTGATGAAGATTTTGATGCCCGATTAATGGACTTTGGACTTGCTAGGCTTATGACATCTGATTCTAATGATAGTAGCTATGTGAATGGAGATTTGGGGGAACTTGGCTATGTGGCTCCAGAATATCCTAGTACCCTAGTTGCTTCACTAAAAGGGGACGTGTATGGATTTGGGGTTGTGCTTTTGGAGTTGGTCACTGGCCGCAAACCTCTTGAAGTTGGCAATGGAGAGGAAGAATTTAAGGGTAACTTGGTGGATTGGGTAACTATGTTTTCTAGCTCTGGTCGAATTAAGGATTGCATTGATAAGAACATTTGTGGGAGGGGGCATGACGAGGAGATTTTGCAGTTCCTGAAAGTTGCCTGTAATTGTGTGGTTTCTCGCCCCAAGGACAGGTGGTCTATGTACCAGGTTTATCATTCGTTGAAGGGTATCTCCAAAAGCTTTAGTTTCTCTGAAGATGATGATGAATTTCCACTGGTTTTTGGTAAGCCTGAGAACGATCCGGCATAG 1818 0.4461 MAKCSMHLRNFSLLLLLCSLASIWGFAASQAEDDVKCLKGIKDSLSDPQGRLASWRFDNNTVGFICEFFGVVCWNPQENRVLNLELRDMKLSGRVPESLKYCGKSLQKLDLGSNDVSGTIPPQICSWLPFLVTLDLSDNHLSGPIPPTLVNCSYLNTLILSNNELLGSIPYEFASLSRLKTFSVANNHLTGTIPSFLSESGKENFAGNSGLCGGPLGSKCGGLSRKNLAIIMAAGLFGAVVSLLFGFGLWWWYRLRLAGNKRGYGIGMDDDWAVRFRGHKLVQVTLFQKPLVKVKLGDLMMATNNFSAKSILISTRTGTTYKADLPDGSTLAVKWLNTCQIGEKLFRMEMNRLGQVRHPNLALLLGFCVVEEEKLLVYKHMSNGTLSSLLHKNGSALDWPNRFRIGLGSARGLAYLHHGCHPPIIHQNICSNVIVVDEDFDARLMDFGLARLMTSDSNDSSYVNGDLGELGYVAPEYPSTLVASLKGDVYGFGVVLLELVTGRKPLEVGNGEEEFKGNLVDWVTMFSSSGRIKDCIDKNICGRGHDEEILQFLKVACNCVVSRPKDRWSMYQVYHSLKGISKSFSFSEDDDEFPLVFGKPENDPA 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1895 605 CDD STKc_IRAK 314 580 - -
Glsi11g1895 605 ProSiteProfiles Protein kinase domain profile. 306 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1895 605 Gene3D Phosphorylase Kinase; domain 1 267 380 - -
Glsi11g1895 605 Gene3D Transferase(Phosphotransferase) domain 1 381 597 - -
Glsi11g1895 605 Pfam Leucine Rich Repeat 131 152 IPR001611 GO:0005515
Glsi11g1895 605 Gene3D Ribonuclease Inhibitor 31 221 IPR032675 -
Glsi11g1895 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 381 599 - -
Glsi11g1895 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 31 221 - -
Glsi11g1895 605 Pfam Protein tyrosine and serine/threonine kinase 327 514 IPR001245 GO:0004672|GO:0006468
Glsi11g1895 605 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 83 579 - -
Glsi11g1895 605 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Glsi11g1895 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 267 380 - -
Glsi11g1895 605 SUPERFAMILY Protein kinase-like (PK-like) 283 577 IPR011009 -
Glsi11g1895 605 SUPERFAMILY L domain-like 31 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1895 Glsi-ChrGlsi11 11888328 11890145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1895 13 603 Receptor kinase-like Gene Family AT3G28450 62.207 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Glsi11g1895 PK_Tyr_Ser-Thr 4e-29 CL0016